3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
9HA6|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9HA6|1|A|C|817
9HA6|1|A|G|818
9HA6|1|A|A|819
9HA6|1|A|A|820
9HA6|1|A|A|821
9HA6|1|A|G|822
*
9HA6|1|A|C|835
9HA6|1|A|G|836
9HA6|1|A|C|837
9HA6|1|A|C|838
*
9HA6|1|A|G|940
9HA6|1|A|A|941
9HA6|1|A|G|942
9HA6|1|A|A|943
9HA6|1|A|C|944
9HA6|1|A|A|945
9HA6|1|A|C|946
*
9HA6|1|A|G|971
9HA6|1|A|A|972
9HA6|1|A|A|973
9HA6|1|A|G|974
9HA6|1|A|A|975
9HA6|1|A|G|976
*
9HA6|1|A|C|987
9HA6|1|A|A|988
9HA6|1|A|G|989
9HA6|1|A|A|990
9HA6|1|A|C|991
*
9HA6|1|A|G|1163
9HA6|1|A|C|1164
*
9HA6|1|A|G|1185
9HA6|1|A|G|1186
9HA6|1|A|G|1187
9HA6|1|A|U|1188
9HA6|1|A|A|1189
9HA6|1|A|G|1190

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL35
Chain B
5S ribosomal RNA; 5S rRNA
Chain L
Large ribosomal subunit protein uL15
Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21
Chain Z
Large ribosomal subunit protein uL30

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6699 s