J7_9HAM_001

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9HAM|1|A|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HAM|1|A|C|8
9HAM|1|A|G|9
9HAM|1|A|A|10
9HAM|1|A|C|11
9HAM|1|A|U|12
9HAM|1|A|A|13
9HAM|1|A|A|14
9HAM|1|A|G|15
*
9HAM|1|A|U|525
9HAM|1|A|A|526
9HAM|1|A|C|527
9HAM|1|A|A|528
9HAM|1|A|A|529
9HAM|1|A|G|530
9HAM|1|A|C|531
*
9HAM|1|A|G|2018
9HAM|1|A|A|2019
9HAM|1|A|A|2020
9HAM|1|A|C|2021
9HAM|1|A|U|2022
9HAM|1|A|C|2023
*
9HAM|1|A|G|2040
9HAM|1|A|U|2041
9HAM|1|A|A|2042
9HAM|1|A|C|2043
*
9HAM|1|A|G|2625
9HAM|1|A|C|2626
9HAM|1|A|G|2627
9HAM|1|A|C|2628
9HAM|1|A|U|2629
9HAM|1|A|G|2630
*
9HAM|1|A|C|2788
9HAM|1|A|C|2789
*
9HAM|1|A|G|2894
9HAM|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21