J7_9HLZ_002

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAU*AGCC*GAGUCAG*CUAAAG*CAGAU*AA*UGGUAA

Length

36 nucleotides

Bulged bases

9HLZ|1|AA|A|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|AA|U|708
9HLZ|1|AA|G|709
9HLZ|1|AA|A|710
9HLZ|1|AA|A|711
9HLZ|1|AA|A|712
9HLZ|1|AA|U|713
*
9HLZ|1|AA|A|726
9HLZ|1|AA|G|727
9HLZ|1|AA|C|728
9HLZ|1|AA|C|729
*
9HLZ|1|AA|G|866
9HLZ|1|AA|A|867
9HLZ|1|AA|G|868
9HLZ|1|AA|U|869
9HLZ|1|AA|C|870
9HLZ|1|AA|A|871
9HLZ|1|AA|G|872
*
9HLZ|1|AA|C|897
9HLZ|1|AA|U|898
9HLZ|1|AA|A|899
9HLZ|1|AA|A|900
9HLZ|1|AA|A|901
9HLZ|1|AA|G|902
*
9HLZ|1|AA|C|913
9HLZ|1|AA|A|914
9HLZ|1|AA|G|915
9HLZ|1|AA|A|916
9HLZ|1|AA|U|917
*
9HLZ|1|AA|A|1183
9HLZ|1|AA|A|1184
*
9HLZ|1|AA|U|1219
9HLZ|1|AA|G|1220
9HLZ|1|AA|G|1221
9HLZ|1|AA|U|1222
9HLZ|1|AA|A|1223
9HLZ|1|AA|A|1224

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m

Chain UU

Large ribosomal subunit protein uL30m

Chain ZZ

Large ribosomal subunit protein bL35m

Chain cc

Large ribosomal subunit protein mL60