J7_9HM0_002

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAU*AGCC*GAGUCAG*CUAAAG*CAGAU*AA*UGGUAA

Length

36 nucleotides

Bulged bases

9HM0|1|AA|A|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|U|708
9HM0|1|AA|G|709
9HM0|1|AA|A|710
9HM0|1|AA|A|711
9HM0|1|AA|A|712
9HM0|1|AA|U|713
*
9HM0|1|AA|A|726
9HM0|1|AA|G|727
9HM0|1|AA|C|728
9HM0|1|AA|C|729
*
9HM0|1|AA|G|866
9HM0|1|AA|A|867
9HM0|1|AA|G|868
9HM0|1|AA|U|869
9HM0|1|AA|C|870
9HM0|1|AA|A|871
9HM0|1|AA|G|872
*
9HM0|1|AA|C|897
9HM0|1|AA|U|898
9HM0|1|AA|A|899
9HM0|1|AA|A|900
9HM0|1|AA|A|901
9HM0|1|AA|G|902
*
9HM0|1|AA|C|913
9HM0|1|AA|A|914
9HM0|1|AA|G|915
9HM0|1|AA|A|916
9HM0|1|AA|U|917
*
9HM0|1|AA|A|1183
9HM0|1|AA|A|1184
*
9HM0|1|AA|U|1219
9HM0|1|AA|G|1220
9HM0|1|AA|G|1221
9HM0|1|AA|U|1222
9HM0|1|AA|A|1223
9HM0|1|AA|A|1224

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m

Chain UU

Large ribosomal subunit protein uL30m

Chain ZZ

Large ribosomal subunit protein bL35m

Chain cc

Large ribosomal subunit protein mL60