J7_9I88_001
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
- Length
- 35 nucleotides
- Bulged bases
- 9I88|1|A|G|575, 9I88|1|A|G|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|A|U|8
9I88|1|A|U|9
9I88|1|A|A|10
9I88|1|A|U|11
9I88|1|A|U|12
9I88|1|A|A|13
9I88|1|A|A|14
9I88|1|A|G|15
*
9I88|1|A|U|570
9I88|1|A|A|571
9I88|1|A|C|572
9I88|1|A|A|573
9I88|1|A|A|574
9I88|1|A|G|575
9I88|1|A|U|576
*
9I88|1|A|A|2045
9I88|1|A|U|2046
9I88|1|A|A|2047
9I88|1|A|G|2048
9I88|1|A|U|2049
9I88|1|A|A|2050
*
9I88|1|A|U|2067
9I88|1|A|U|2068
9I88|1|A|A|2069
9I88|1|A|C|2070
*
9I88|1|A|G|2652
9I88|1|A|C|2653
9I88|1|A|G|2654
9I88|1|A|U|2655
9I88|1|A|A|2656
9I88|1|A|G|2657
*
9I88|1|A|C|2815
9I88|1|A|C|2816
*
9I88|1|A|G|2913
9I88|1|A|A|2914
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain H
- Large ribosomal subunit protein uL3
- Chain M
- Large ribosomal subunit protein uL13
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
Coloring options: