J7_9I88_002
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9I88|1|A|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|A|C|862
9I88|1|A|G|863
9I88|1|A|A|864
9I88|1|A|A|865
9I88|1|A|A|866
9I88|1|A|U|867
*
9I88|1|A|A|880
9I88|1|A|G|881
*
9I88|1|A|U|987
9I88|1|A|C|988
9I88|1|A|A|989
9I88|1|A|G|990
*
9I88|1|A|C|1015
9I88|1|A|G|1016
9I88|1|A|A|1017
9I88|1|A|A|1018
9I88|1|A|A|1019
9I88|1|A|G|1020
*
9I88|1|A|C|1031
9I88|1|A|A|1032
9I88|1|A|G|1033
9I88|1|A|A|1034
9I88|1|A|C|1035
*
9I88|1|A|G|1207
9I88|1|A|A|1208
*
9I88|1|A|U|1224
9I88|1|A|G|1225
9I88|1|A|G|1226
9I88|1|A|U|1227
9I88|1|A|A|1228
9I88|1|A|G|1229
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein uL30
- Chain 8
- Large ribosomal subunit protein bL35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- Large ribosomal subunit protein uL15
- Chain T
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein bL21
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