J7_9JMK_001

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9JMK|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JMK|1|A|C|8
9JMK|1|A|G|9
9JMK|1|A|A|10
9JMK|1|A|C|11
9JMK|1|A|U|12
9JMK|1|A|A|13
9JMK|1|A|A|14
9JMK|1|A|G|15
*
9JMK|1|A|U|525
9JMK|1|A|A|526
9JMK|1|A|C|527
9JMK|1|A|A|528
9JMK|1|A|A|529
9JMK|1|A|G|530
9JMK|1|A|C|531
*
9JMK|1|A|G|2018
9JMK|1|A|A|2019
9JMK|1|A|A|2020
9JMK|1|A|C|2021
9JMK|1|A|U|2022
9JMK|1|A|C|2023
*
9JMK|1|A|G|2040
9JMK|1|A|U|2041
9JMK|1|A|A|2042
9JMK|1|A|C|2043
*
9JMK|1|A|G|2625
9JMK|1|A|C|2626
9JMK|1|A|G|2627
9JMK|1|A|C|2628
9JMK|1|A|U|2629
9JMK|1|A|G|2630
*
9JMK|1|A|C|2788
9JMK|1|A|C|2789
*
9JMK|1|A|G|2894
9JMK|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22