J7_9KDV_002
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAG*CAC*GGCAGCAGGCGCGCAAAUUACCCACUCC*GGGAGGUAGUGACG
- Length
- 129 nucleotides
- Bulged bases
- 9KDV|1|S2|A|45, 9KDV|1|S2|C|49, 9KDV|1|S2|A|50, 9KDV|1|S2|A|54, 9KDV|1|S2|C|65, 9KDV|1|S2|C|67, 9KDV|1|S2|A|77, 9KDV|1|S2|A|91, 9KDV|1|S2|G|408, 9KDV|1|S2|C|484, 9KDV|1|S2|U|488, 9KDV|1|S2|C|495, 9KDV|1|S2|A|517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|C|37
9KDV|1|S2|A|38
9KDV|1|S2|A|39
9KDV|1|S2|A|40
9KDV|1|S2|G|41
9KDV|1|S2|A|42
9KDV|1|S2|U|43
9KDV|1|S2|U|44
9KDV|1|S2|A|45
9KDV|1|S2|A|46
9KDV|1|S2|G|47
9KDV|1|S2|C|48
9KDV|1|S2|C|49
9KDV|1|S2|A|50
9KDV|1|S2|U|51
9KDV|1|S2|G|52
9KDV|1|S2|C|53
9KDV|1|S2|A|54
9KDV|1|S2|U|55
9KDV|1|S2|G|56
9KDV|1|S2|U|57
9KDV|1|S2|C|58
9KDV|1|S2|U|59
9KDV|1|S2|A|60
9KDV|1|S2|A|61
9KDV|1|S2|G|62
9KDV|1|S2|U|63
9KDV|1|S2|A|64
9KDV|1|S2|C|65
9KDV|1|S2|G|66
9KDV|1|S2|C|67
9KDV|1|S2|A|68
9KDV|1|S2|C|69
9KDV|1|S2|G|70
9KDV|1|S2|G|71
9KDV|1|S2|C|72
9KDV|1|S2|C|73
9KDV|1|S2|G|74
9KDV|1|S2|G|75
9KDV|1|S2|U|76
9KDV|1|S2|A|77
9KDV|1|S2|C|78
9KDV|1|S2|A|79
9KDV|1|S2|G|80
9KDV|1|S2|U|81
9KDV|1|S2|G|82
9KDV|1|S2|A|83
9KDV|1|S2|A|84
9KDV|1|S2|A|85
9KDV|1|S2|C|86
9KDV|1|S2|U|87
9KDV|1|S2|G|88
9KDV|1|S2|C|89
9KDV|1|S2|G|90
9KDV|1|S2|A|91
9KDV|1|S2|A|92
9KDV|1|S2|U|93
9KDV|1|S2|G|94
9KDV|1|S2|G|95
9KDV|1|S2|C|96
9KDV|1|S2|U|97
9KDV|1|S2|C|98
9KDV|1|S2|A|99
9KDV|1|S2|U|100
9KDV|1|S2|U|101
9KDV|1|S2|A|102
9KDV|1|S2|A|103
9KDV|1|S2|A|104
9KDV|1|S2|U|105
9KDV|1|S2|C|106
*
9KDV|1|S2|G|356
9KDV|1|S2|C|357
9KDV|1|S2|C|358
*
9KDV|1|S2|G|406
9KDV|1|S2|U|407
9KDV|1|S2|G|408
9KDV|1|S2|A|409
9KDV|1|S2|C|410
*
9KDV|1|S2|G|432
9KDV|1|S2|G|433
9KDV|1|S2|A|434
9KDV|1|S2|G|435
9KDV|1|S2|A|436
9KDV|1|S2|G|437
*
9KDV|1|S2|C|458
9KDV|1|S2|A|459
9KDV|1|S2|C|460
*
9KDV|1|S2|G|471
9KDV|1|S2|G|472
9KDV|1|S2|C|473
9KDV|1|S2|A|474
9KDV|1|S2|G|475
9KDV|1|S2|C|476
9KDV|1|S2|A|477
9KDV|1|S2|G|478
9KDV|1|S2|G|479
9KDV|1|S2|C|480
9KDV|1|S2|G|481
9KDV|1|S2|C|482
9KDV|1|S2|G|483
9KDV|1|S2|C|484
9KDV|1|S2|A|485
9KDV|1|S2|A|486
9KDV|1|S2|A|487
9KDV|1|S2|U|488
9KDV|1|S2|U|489
9KDV|1|S2|A|490
9KDV|1|S2|C|491
9KDV|1|S2|C|492
9KDV|1|S2|C|493
9KDV|1|S2|A|494
9KDV|1|S2|C|495
9KDV|1|S2|U|496
9KDV|1|S2|C|497
9KDV|1|S2|C|498
*
9KDV|1|S2|G|506
9KDV|1|S2|G|507
9KDV|1|S2|G|508
9KDV|1|S2|A|509
9KDV|1|S2|G|510
9KDV|1|S2|G|511
9KDV|1|S2|U|512
9KDV|1|S2|A|513
9KDV|1|S2|G|514
9KDV|1|S2|U|515
9KDV|1|S2|G|516
9KDV|1|S2|A|517
9KDV|1|S2|C|518
9KDV|1|S2|G|519
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Small ribosomal subunit protein eS24
Coloring options: