J7_9KMW_001

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CCAGGAGUGGAGCCUGCGGCUUAAUUU*GGGAAACCUCACCCG*CCCGGAC*GGGUGGUGGUGCAU*AUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC*GGAAUUCCCAGUAA*UGAUUAAG

Length

120 nucleotides

Bulged bases

9KMW|1|2|G|1229, 9KMW|1|2|C|1230, 9KMW|1|2|C|1237, 9KMW|1|2|U|1238, 9KMW|1|2|U|1239, 9KMW|1|2|G|1256, 9KMW|1|2|G|1257, 9KMW|1|2|A|1258, 9KMW|1|2|A|1259, 9KMW|1|2|A|1260, 9KMW|1|2|U|1263, 9KMW|1|2|C|1268, 9KMW|1|2|C|1272, 9KMW|1|2|U|1326, 9KMW|1|2|C|1331, 9KMW|1|2|U|1505, 9KMW|1|2|G|1507, 9KMW|1|2|U|1509, 9KMW|1|2|U|1519, 9KMW|1|2|C|1521, 9KMW|1|2|A|1522, 9KMW|1|2|C|1523, 9KMW|1|2|G|1524, 9KMW|1|2|G|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|1218
9KMW|1|2|C|1219
9KMW|1|2|A|1220
9KMW|1|2|G|1221
9KMW|1|2|G|1222
9KMW|1|2|A|1223
9KMW|1|2|G|1224
9KMW|1|2|U|1225
9KMW|1|2|G|1226
9KMW|1|2|G|1227
9KMW|1|2|A|1228
9KMW|1|2|G|1229
9KMW|1|2|C|1230
9KMW|1|2|C|1231
9KMW|1|2|U|1232
9KMW|1|2|G|1233
9KMW|1|2|C|1234
9KMW|1|2|G|1235
9KMW|1|2|G|1236
9KMW|1|2|C|1237
9KMW|1|2|U|1238
9KMW|1|2|U|1239
9KMW|1|2|A|1240
9KMW|1|2|A|1241
9KMW|1|2|U|1242
9KMW|1|2|U|1243
9KMW|1|2|U|1244
*
9KMW|1|2|G|1255
9KMW|1|2|G|1256
9KMW|1|2|G|1257
9KMW|1|2|A|1258
9KMW|1|2|A|1259
9KMW|1|2|A|1260
9KMW|1|2|C|1261
9KMW|1|2|C|1262
9KMW|1|2|U|1263
9KMW|1|2|C|1264
9KMW|1|2|A|1265
9KMW|1|2|C|1266
9KMW|1|2|C|1267
9KMW|1|2|C|1268
9KMW|1|2|G|1269
*
9KMW|1|2|C|1271
9KMW|1|2|C|1272
9KMW|1|2|C|1273
9KMW|1|2|G|1274
9KMW|1|2|G|1275
9KMW|1|2|A|1276
9KMW|1|2|C|1277
*
9KMW|1|2|G|1320
9KMW|1|2|G|1321
9KMW|1|2|G|1322
9KMW|1|2|U|1323
9KMW|1|2|G|1324
9KMW|1|2|G|1325
9KMW|1|2|U|1326
9KMW|1|2|G|1327
9KMW|1|2|G|1328
9KMW|1|2|U|1329
9KMW|1|2|G|1330
9KMW|1|2|C|1331
9KMW|1|2|A|1332
9KMW|1|2|U|1333
*
9KMW|1|2|A|1498
9KMW|1|2|U|1499
9KMW|1|2|G|1500
9KMW|1|2|C|1501
9KMW|1|2|C|1502
9KMW|1|2|C|1503
9KMW|1|2|U|1504
9KMW|1|2|U|1505
9KMW|1|2|A|1506
9KMW|1|2|G|1507
9KMW|1|2|A|1508
9KMW|1|2|U|1509
9KMW|1|2|G|1510
9KMW|1|2|U|1511
9KMW|1|2|C|1512
9KMW|1|2|C|1513
9KMW|1|2|G|1514
9KMW|1|2|G|1515
9KMW|1|2|G|1516
9KMW|1|2|G|1517
9KMW|1|2|C|1518
9KMW|1|2|U|1519
9KMW|1|2|G|1520
9KMW|1|2|C|1521
9KMW|1|2|A|1522
9KMW|1|2|C|1523
9KMW|1|2|G|1524
9KMW|1|2|C|1525
9KMW|1|2|G|1526
9KMW|1|2|C|1527
9KMW|1|2|G|1528
9KMW|1|2|C|1529
9KMW|1|2|U|1530
9KMW|1|2|A|1531
9KMW|1|2|C|1532
*
9KMW|1|2|G|1638
9KMW|1|2|G|1639
9KMW|1|2|A|1640
9KMW|1|2|A|1641
9KMW|1|2|U|1642
9KMW|1|2|U|1643
9KMW|1|2|C|1644
9KMW|1|2|C|1645
9KMW|1|2|C|1646
9KMW|1|2|A|1647
9KMW|1|2|G|1648
9KMW|1|2|U|1649
9KMW|1|2|A|1650
9KMW|1|2|A|1651
*
9KMW|1|2|U|1673
9KMW|1|2|G|1674
9KMW|1|2|A|1675
9KMW|1|2|U|1676
9KMW|1|2|U|1677
9KMW|1|2|A|1678
9KMW|1|2|A|1679
9KMW|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain c

Small ribosomal subunit protein eS28

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31