J7_9NJV_001

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NJV|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|C|8
9NJV|1|R1|G|9
9NJV|1|R1|A|10
9NJV|1|R1|C|11
9NJV|1|R1|U|12
9NJV|1|R1|A|13
9NJV|1|R1|A|14
9NJV|1|R1|G|15
*
9NJV|1|R1|U|525
9NJV|1|R1|A|526
9NJV|1|R1|C|527
9NJV|1|R1|A|528
9NJV|1|R1|A|529
9NJV|1|R1|G|530
9NJV|1|R1|C|531
*
9NJV|1|R1|G|2018
9NJV|1|R1|A|2019
9NJV|1|R1|A|2020
9NJV|1|R1|C|2021
9NJV|1|R1|U|2022
9NJV|1|R1|C|2023
*
9NJV|1|R1|G|2040
9NJV|1|R1|U|2041
9NJV|1|R1|A|2042
9NJV|1|R1|C|2043
*
9NJV|1|R1|G|2625
9NJV|1|R1|C|2626
9NJV|1|R1|G|2627
9NJV|1|R1|C|2628
9NJV|1|R1|U|2629
9NJV|1|R1|G|2630
*
9NJV|1|R1|C|2788
9NJV|1|R1|C|2789
*
9NJV|1|R1|G|2894
9NJV|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32