J7_9NO7_001

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9NO7|1|A|G|530, 9NO7|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|A|A|8
9NO7|1|A|U|9
9NO7|1|A|G|10
9NO7|1|A|G|11
9NO7|1|A|U|12
9NO7|1|A|A|13
9NO7|1|A|A|14
9NO7|1|A|G|15
*
9NO7|1|A|U|525
9NO7|1|A|A|526
9NO7|1|A|C|527
9NO7|1|A|A|528
9NO7|1|A|A|529
9NO7|1|A|G|530
9NO7|1|A|C|531
*
9NO7|1|A|G|2018
9NO7|1|A|A|2019
9NO7|1|A|A|2020
9NO7|1|A|C|2021
9NO7|1|A|U|2022
9NO7|1|A|G|2023
*
9NO7|1|A|C|2040
9NO7|1|A|U|2041
9NO7|1|A|A|2042
9NO7|1|A|C|2043
*
9NO7|1|A|G|2625
9NO7|1|A|C|2626
9NO7|1|A|G|2627
9NO7|1|A|C|2628
9NO7|1|A|A|2629
9NO7|1|A|G|2630
*
9NO7|1|A|C|2788
9NO7|1|A|C|2789
*
9NO7|1|A|G|2894
9NO7|1|A|U|2895

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L13

Chain U

50S ribosomal protein L20

Chain W

50S ribosomal protein L22