Loop J7_9Q3R

3D structure

PDB id: 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length: 35 nucleotides
Bulged bases: 9Q3R|1|A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q3R|1|A|C|8
9Q3R|1|A|G|9
9Q3R|1|A|A|10
9Q3R|1|A|C|11
9Q3R|1|A|U|12
9Q3R|1|A|A|13
9Q3R|1|A|A|14
9Q3R|1|A|G|15
*
9Q3R|1|A|U|525
9Q3R|1|A|A|526
9Q3R|1|A|C|527
9Q3R|1|A|A|528
9Q3R|1|A|A|529
9Q3R|1|A|G|530
9Q3R|1|A|C|531
*
9Q3R|1|A|G|2018
9Q3R|1|A|A|2019
9Q3R|1|A|A|2020
9Q3R|1|A|C|2021
9Q3R|1|A|U|2022
9Q3R|1|A|C|2023
*
9Q3R|1|A|G|2040
9Q3R|1|A|U|2041
9Q3R|1|A|A|2042
9Q3R|1|A|C|2043
*
9Q3R|1|A|G|2625
9Q3R|1|A|C|2626
9Q3R|1|A|G|2627
9Q3R|1|A|C|2628
9Q3R|1|A|U|2629
9Q3R|1|A|G|2630
*
9Q3R|1|A|C|2788
9Q3R|1|A|C|2789
*
9Q3R|1|A|G|2894
9Q3R|1|A|G|2895

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 4: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain L: Large ribosomal subunit protein uL13
Chain S: 50S ribosomal protein L20
Chain T: Ribosomal protein L21
Chain U: 50S ribosomal protein L22

J7_9Q3R_001