Loop J7_9Q3R

3D structure

PDB id: 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length: 36 nucleotides
Bulged bases: 9Q3R|1|A|A|945
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q3R|1|A|C|817
9Q3R|1|A|G|818
9Q3R|1|A|A|819
9Q3R|1|A|A|820
9Q3R|1|A|A|821
9Q3R|1|A|G|822
*
9Q3R|1|A|C|835
9Q3R|1|A|G|836
9Q3R|1|A|C|837
9Q3R|1|A|C|838
*
9Q3R|1|A|G|940
9Q3R|1|A|A|941
9Q3R|1|A|G|942
9Q3R|1|A|A|943
9Q3R|1|A|C|944
9Q3R|1|A|A|945
9Q3R|1|A|C|946
*
9Q3R|1|A|G|971
9Q3R|1|A|A|972
9Q3R|1|A|A|973
9Q3R|1|A|G|974
9Q3R|1|A|A|975
9Q3R|1|A|G|976
*
9Q3R|1|A|C|987
9Q3R|1|A|A|988
9Q3R|1|A|G|989
9Q3R|1|A|A|990
9Q3R|1|A|C|991
*
9Q3R|1|A|G|1163
9Q3R|1|A|C|1164
*
9Q3R|1|A|G|1185
9Q3R|1|A|G|1186
9Q3R|1|A|G|1187
9Q3R|1|A|U|1188
9Q3R|1|A|A|1189
9Q3R|1|A|G|1190

Current chains

Chain A: 23S Ribosomal RNA

Nearby chains

Chain 2: 50S ribosomal protein L30
Chain 7: 50S ribosomal protein L35
Chain B: 5S ribosomal RNA; 5S rRNA
Chain N: 50S ribosomal protein L15
Chain S: 50S ribosomal protein L20
Chain T: Ribosomal protein L21

J7_9Q3R_002