J7_9QEG_001

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

9QEG|1|A|G|575, 9QEG|1|A|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QEG|1|A|U|8
9QEG|1|A|U|9
9QEG|1|A|A|10
9QEG|1|A|U|11
9QEG|1|A|U|12
9QEG|1|A|A|13
9QEG|1|A|A|14
9QEG|1|A|G|15
*
9QEG|1|A|U|570
9QEG|1|A|A|571
9QEG|1|A|C|572
9QEG|1|A|A|573
9QEG|1|A|A|574
9QEG|1|A|G|575
9QEG|1|A|U|576
*
9QEG|1|A|A|2045
9QEG|1|A|U|2046
9QEG|1|A|A|2047
9QEG|1|A|G|2048
9QEG|1|A|U|2049
9QEG|1|A|A|2050
*
9QEG|1|A|U|2067
9QEG|1|A|U|2068
9QEG|1|A|A|2069
9QEG|1|A|C|2070
*
9QEG|1|A|G|2652
9QEG|1|A|C|2653
9QEG|1|A|G|2654
9QEG|1|A|U|2655
9QEG|1|A|A|2656
9QEG|1|A|G|2657
*
9QEG|1|A|C|2815
9QEG|1|A|C|2816
*
9QEG|1|A|G|2913
9QEG|1|A|A|2914

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL13

Chain O

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein bL21

Chain Q

Large ribosomal subunit protein uL22

Chain Z

Large ribosomal subunit protein bL32