J7_9SS4_002
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 9SS4|1|D2|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SS4|1|D2|C|817
9SS4|1|D2|G|818
9SS4|1|D2|A|819
9SS4|1|D2|A|820
9SS4|1|D2|A|821
9SS4|1|D2|G|822
*
9SS4|1|D2|C|835
9SS4|1|D2|G|836
9SS4|1|D2|C|837
9SS4|1|D2|C|838
*
9SS4|1|D2|G|940
9SS4|1|D2|A|941
9SS4|1|D2|G|942
9SS4|1|D2|A|943
9SS4|1|D2|C|944
9SS4|1|D2|A|945
9SS4|1|D2|C|946
*
9SS4|1|D2|G|971
9SS4|1|D2|A|972
9SS4|1|D2|A|973
9SS4|1|D2|G|974
9SS4|1|D2|A|975
9SS4|1|D2|G|976
*
9SS4|1|D2|C|987
9SS4|1|D2|A|988
9SS4|1|D2|G|989
9SS4|1|D2|A|990
9SS4|1|D2|C|991
*
9SS4|1|D2|G|1163
9SS4|1|D2|C|1164
*
9SS4|1|D2|G|1185
9SS4|1|D2|G|1186
9SS4|1|D2|G|1187
9SS4|1|D2|U|1188
9SS4|1|D2|A|1189
9SS4|1|D2|G|1190
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B3
- Large ribosomal subunit protein uL30
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BO
- Large ribosomal subunit protein uL15
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BU
- Large ribosomal subunit protein bL21
- Chain D3
- 5S ribosomal RNA; 5S rRNA
Coloring options: