J7_9TZ5_002

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GGAAAG*CAGAU*GC*GGGUAG

Length

36 nucleotides

Bulged bases

9TZ5|1|a|A|951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZ5|1|a|C|824
9TZ5|1|a|G|825
9TZ5|1|a|A|826
9TZ5|1|a|A|827
9TZ5|1|a|A|828
9TZ5|1|a|G|829
*
9TZ5|1|a|C|842
9TZ5|1|a|G|843
9TZ5|1|a|C|844
9TZ5|1|a|C|845
*
9TZ5|1|a|G|946
9TZ5|1|a|A|947
9TZ5|1|a|G|948
9TZ5|1|a|A|949
9TZ5|1|a|C|950
9TZ5|1|a|A|951
9TZ5|1|a|C|952
*
9TZ5|1|a|G|977
9TZ5|1|a|G|978
9TZ5|1|a|A|979
9TZ5|1|a|A|980
9TZ5|1|a|A|981
9TZ5|1|a|G|982
*
9TZ5|1|a|C|993
9TZ5|1|a|A|994
9TZ5|1|a|G|995
9TZ5|1|a|A|996
9TZ5|1|a|U|997
*
9TZ5|1|a|G|1170
9TZ5|1|a|C|1171
*
9TZ5|1|a|G|1195
9TZ5|1|a|G|1196
9TZ5|1|a|G|1197
9TZ5|1|a|U|1198
9TZ5|1|a|A|1199
9TZ5|1|a|G|1200

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Coxiellacae Large Subunit Peptide (CLaSP)

Chain b

5S ribosomal RNA; 5S rRNA

Chain e

Large ribosomal subunit protein bL20

Chain h

Large ribosomal subunit protein bL21

Chain k

Large ribosomal subunit protein uL15

Chain t

Large ribosomal subunit protein uL30

Chain z

Large ribosomal subunit protein bL35