Loop J7_9VTH

3D structure

PDB id: 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
Description: cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

Loop

Sequence: CGAAGU*AG*UGGG*CGAUGC*GGAAG*CC*GAGUAG
Length: 31 nucleotides
Bulged bases: 9VTH|1|14|G|1127
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9VTH|1|14|C|959
9VTH|1|14|G|960
9VTH|1|14|A|961
9VTH|1|14|A|962
9VTH|1|14|G|963
9VTH|1|14|U|964
*
9VTH|1|14|A|977
9VTH|1|14|G|978
*
9VTH|1|14|U|1125
9VTH|1|14|G|1126
9VTH|1|14|G|1127
9VTH|1|14|G|1128
*
9VTH|1|14|C|1152
9VTH|1|14|G|1153
9VTH|1|14|A|1154
9VTH|1|14|U|1155
9VTH|1|14|G|1156
9VTH|1|14|C|1157
*
9VTH|1|14|G|1168
9VTH|1|14|G|1169
9VTH|1|14|A|1170
9VTH|1|14|A|1171
9VTH|1|14|G|1172
*
9VTH|1|14|C|1350
9VTH|1|14|C|1351
*
9VTH|1|14|G|1377
9VTH|1|14|A|1378
9VTH|1|14|G|1379
9VTH|1|14|U|1380
9VTH|1|14|A|1381
9VTH|1|14|G|1382

Current chains

Chain 14: 25S rRNA

Nearby chains

Chain 12: 5S ribosomal RNA; 5S rRNA
Chain LD: 60S ribosomal protein L4-like
Chain LI: 60s ribosomal protein l27a-3
Chain LP: 60S ribosomal protein L7-4-like
Chain LS: 60S ribosomal protein L13
Chain LV: 60S ribosomal protein L18-2
Chain LY: 60S ribosomal protein L21-1-like
Chain Ld: 60S ribosomal protein L29
Chain Lg: 60S ribosomal protein L32-1
Chain Lh: 60S ribosomal protein L35a-3-like

J7_9VTH_001