Loop J7_9W0N

3D structure

PDB id: 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
Description: Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length: 35 nucleotides
Bulged bases: 9W0N|1|1|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9W0N|1|1|C|8
9W0N|1|1|G|9
9W0N|1|1|A|10
9W0N|1|1|C|11
9W0N|1|1|U|12
9W0N|1|1|A|13
9W0N|1|1|A|14
9W0N|1|1|G|15
*
9W0N|1|1|U|525
9W0N|1|1|A|526
9W0N|1|1|C|527
9W0N|1|1|A|528
9W0N|1|1|A|529
9W0N|1|1|G|530
9W0N|1|1|C|531
*
9W0N|1|1|G|2018
9W0N|1|1|A|2019
9W0N|1|1|A|2020
9W0N|1|1|C|2021
9W0N|1|1|U|2022
9W0N|1|1|C|2023
*
9W0N|1|1|G|2040
9W0N|1|1|U|2041
9W0N|1|1|A|2042
9W0N|1|1|C|2043
*
9W0N|1|1|G|2625
9W0N|1|1|C|2626
9W0N|1|1|G|2627
9W0N|1|1|C|2628
9W0N|1|1|U|2629
9W0N|1|1|G|2630
*
9W0N|1|1|C|2788
9W0N|1|1|C|2789
*
9W0N|1|1|G|2894
9W0N|1|1|G|2895

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain B: Large ribosomal subunit protein bL32
Chain c: Large ribosomal subunit protein uL3
Chain j: Large ribosomal subunit protein uL13
Chain q: Large ribosomal subunit protein bL20
Chain s: Large ribosomal subunit protein uL22

J7_9W0N_001