Loop J7_9W0N

3D structure

PDB id: 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
Description: Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length: 36 nucleotides
Bulged bases: 9W0N|1|1|A|945
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9W0N|1|1|C|817
9W0N|1|1|G|818
9W0N|1|1|A|819
9W0N|1|1|A|820
9W0N|1|1|A|821
9W0N|1|1|G|822
*
9W0N|1|1|C|835
9W0N|1|1|G|836
9W0N|1|1|C|837
9W0N|1|1|C|838
*
9W0N|1|1|G|940
9W0N|1|1|A|941
9W0N|1|1|G|942
9W0N|1|1|A|943
9W0N|1|1|C|944
9W0N|1|1|A|945
9W0N|1|1|C|946
*
9W0N|1|1|G|971
9W0N|1|1|A|972
9W0N|1|1|A|973
9W0N|1|1|G|974
9W0N|1|1|A|975
9W0N|1|1|G|976
*
9W0N|1|1|C|987
9W0N|1|1|A|988
9W0N|1|1|G|989
9W0N|1|1|A|990
9W0N|1|1|C|991
*
9W0N|1|1|G|1163
9W0N|1|1|C|1164
*
9W0N|1|1|G|1185
9W0N|1|1|G|1186
9W0N|1|1|G|1187
9W0N|1|1|U|1188
9W0N|1|1|A|1189
9W0N|1|1|G|1190

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 2: 5S ribosomal RNA; 5S rRNA
Chain E: Large ribosomal subunit protein bL35
Chain l: Large ribosomal subunit protein uL15
Chain q: Large ribosomal subunit protein bL20
Chain r: Large ribosomal subunit protein bL21
Chain z: Large ribosomal subunit protein uL30

J7_9W0N_002