J7_9YDB_001

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9YDB|1|A|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDB|1|A|C|949
9YDB|1|A|G|950
9YDB|1|A|A|951
9YDB|1|A|A|952
9YDB|1|A|G|953
9YDB|1|A|U|954
*
9YDB|1|A|A|967
9YDB|1|A|G|968
*
9YDB|1|A|U|1114
9YDB|1|A|G|1115
9YDB|1|A|G|1116
9YDB|1|A|G|1117
*
9YDB|1|A|C|1141
9YDB|1|A|G|1142
9YDB|1|A|A|1143
9YDB|1|A|U|1144
9YDB|1|A|G|1145
9YDB|1|A|C|1146
*
9YDB|1|A|G|1157
9YDB|1|A|A|1158
9YDB|1|A|A|1159
9YDB|1|A|C|1160
9YDB|1|A|G|1161
*
9YDB|1|A|C|1338
9YDB|1|A|C|1339
*
9YDB|1|A|G|1365
9YDB|1|A|A|1366
9YDB|1|A|G|1367
9YDB|1|A|U|1368
9YDB|1|A|A|1369
9YDB|1|A|G|1370

Current chains

Chain A

25S RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LI

60S ribosomal protein L7-A

Chain LN

60S ribosomal protein L13-A

Chain LS

60S ribosomal protein L18-A

Chain LV

60S ribosomal protein L21-A

Chain Lc

60S ribosomal protein L28

Chain Ld

60S ribosomal protein L29

Chain Lg

60S ribosomal protein L32

Chain Lh

60S ribosomal protein L33-A