Loop J8_11GG

3D structure

PDB id: 11GG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å

Loop

Sequence: GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAGCCC*GAGUAG*UGAAUAUG*CAAGGCUAAAUAC
Length: 58 nucleotides
Bulged bases: 11GG|1|I|U|405
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

11GG|1|I|G|45
11GG|1|I|G|46
*
11GG|1|I|C|179
11GG|1|I|G|180
11GG|1|I|A|181
11GG|1|I|A|182
11GG|1|I|C|183
*
11GG|1|I|G|214
11GG|1|I|G|215
11GG|1|I|A|216
11GG|1|I|A|217
11GG|1|I|A|218
11GG|1|I|A|219
11GG|1|I|G|220
11GG|1|I|A|221
11GG|1|I|A|222
11GG|1|I|A|223
11GG|1|I|U|224
*
11GG|1|I|A|231
11GG|1|I|G|232
11GG|1|I|A|233
11GG|1|I|U|234
11GG|1|I|U|235
*
11GG|1|I|A|262
11GG|1|I|G|263
11GG|1|I|C|264
11GG|1|I|A|265
11GG|1|I|G|266
11GG|1|I|C|267
11GG|1|I|C|268
11GG|1|I|C|269
*
11GG|1|I|G|370
11GG|1|I|A|371
11GG|1|I|G|372
11GG|1|I|U|373
11GG|1|I|A|374
11GG|1|I|G|375
*
11GG|1|I|U|399
11GG|1|I|G|400
11GG|1|I|A|401
11GG|1|I|A|402
11GG|1|I|U|403
11GG|1|I|A|404
11GG|1|I|U|405
11GG|1|I|G|406
*
11GG|1|I|C|421
11GG|1|I|A|422
11GG|1|I|A|423
11GG|1|I|G|424
11GG|1|I|G|425
11GG|1|I|C|426
11GG|1|I|U|427
11GG|1|I|A|428
11GG|1|I|A|429
11GG|1|I|A|430
11GG|1|I|U|431
11GG|1|I|A|432
11GG|1|I|C|433

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

Chain P: Large ribosomal subunit protein bL9
Chain f: 50S ribosomal protein L28
Chain k: 50S ribosomal protein L34

J8_11GG_001