J8_1VWW_001

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGA*UUUGA*UACA*UGUCCUAAGGCG*CGCUUG*CC*GGGGCCUCACGAUCCUUCU*AGGAGGUGUCAGAAAA

Length

68 nucleotides

Bulged bases

1VWW|1|5|G|3922, 1VWW|1|5|A|4203, 1VWW|1|5|C|4231, 1VWW|1|5|A|4234, 1VWW|1|5|C|4332, 1VWW|1|5|A|4376, 1VWW|1|5|A|4378, 1VWW|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|3920
1VWW|1|5|U|3921
1VWW|1|5|G|3922
1VWW|1|5|A|3923
*
1VWW|1|5|U|4188
1VWW|1|5|U|4189
1VWW|1|5|U|4190
1VWW|1|5|G|4191
1VWW|1|5|A|4192
*
1VWW|1|5|U|4202
1VWW|1|5|A|4203
1VWW|1|5|C|4204
1VWW|1|5|A|4205
*
1VWW|1|5|U|4227
1VWW|1|5|G|4228
1VWW|1|5|U|4229
1VWW|1|5|C|4230
1VWW|1|5|C|4231
1VWW|1|5|U|4232
1VWW|1|5|A|4233
1VWW|1|5|A|4234
1VWW|1|5|G|4235
1VWW|1|5|G|4236
1VWW|1|5|C|4237
1VWW|1|5|G|4238
*
1VWW|1|5|C|4286
1VWW|1|5|G|4287
1VWW|1|5|C|4288
1VWW|1|5|U|4289
1VWW|1|5|U|4290
1VWW|1|5|G|4291
*
1VWW|1|5|C|4318
1VWW|1|5|C|4319
*
1VWW|1|5|G|4328
1VWW|1|5|G|4329
1VWW|1|5|G|4330
1VWW|1|5|G|4331
1VWW|1|5|C|4332
1VWW|1|5|C|4333
1VWW|1|5|U|4334
1VWW|1|5|C|4335
1VWW|1|5|A|4336
1VWW|1|5|C|4337
1VWW|1|5|G|4338
1VWW|1|5|A|4339
1VWW|1|5|U|4340
1VWW|1|5|C|4341
1VWW|1|5|C|4342
1VWW|1|5|U|4343
1VWW|1|5|U|4344
1VWW|1|5|C|4345
1VWW|1|5|U|4346
*
1VWW|1|5|A|4366
1VWW|1|5|G|4367
1VWW|1|5|G|4368
1VWW|1|5|A|4369
1VWW|1|5|G|4370
1VWW|1|5|G|4371
1VWW|1|5|U|4372
1VWW|1|5|G|4373
1VWW|1|5|U|4374
1VWW|1|5|C|4375
1VWW|1|5|A|4376
1VWW|1|5|G|4377
1VWW|1|5|A|4378
1VWW|1|5|A|4379
1VWW|1|5|A|4380
1VWW|1|5|A|4381

Current chains

Chain 5

28S ribosomal RNA

Nearby chains