J8_1VWW_002
3D structure
- PDB id
- 1VWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUGA*UACA*UGUCCUAAGGCGAGCUCAG*CGUGGAGCAGAAGGGCAAAAGCUCGCUUG*CC*GGGGCCUCACGAUCCUUCU*AGGAGGUGUCAGAAAA
- Length
- 98 nucleotides
- Bulged bases
- 1VWW|1|5|G|3922, 1VWW|1|5|A|4203, 1VWW|1|5|C|4231, 1VWW|1|5|A|4280, 1VWW|1|5|A|4376, 1VWW|1|5|A|4378, 1VWW|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VWW|1|5|U|3920
1VWW|1|5|U|3921
1VWW|1|5|G|3922
1VWW|1|5|A|3923
*
1VWW|1|5|U|4188
1VWW|1|5|U|4189
1VWW|1|5|U|4190
1VWW|1|5|G|4191
1VWW|1|5|A|4192
*
1VWW|1|5|U|4202
1VWW|1|5|A|4203
1VWW|1|5|C|4204
1VWW|1|5|A|4205
*
1VWW|1|5|U|4227
1VWW|1|5|G|4228
1VWW|1|5|U|4229
1VWW|1|5|C|4230
1VWW|1|5|C|4231
1VWW|1|5|U|4232
1VWW|1|5|A|4233
1VWW|1|5|A|4234
1VWW|1|5|G|4235
1VWW|1|5|G|4236
1VWW|1|5|C|4237
1VWW|1|5|G|4238
1VWW|1|5|A|4239
1VWW|1|5|G|4240
1VWW|1|5|C|4241
1VWW|1|5|U|4242
1VWW|1|5|C|4243
1VWW|1|5|A|4244
1VWW|1|5|G|4245
*
1VWW|1|5|C|4263
1VWW|1|5|G|4264
1VWW|1|5|U|4265
1VWW|1|5|G|4266
1VWW|1|5|G|4267
1VWW|1|5|A|4268
1VWW|1|5|G|4269
1VWW|1|5|C|4270
1VWW|1|5|A|4271
1VWW|1|5|G|4272
1VWW|1|5|A|4273
1VWW|1|5|A|4274
1VWW|1|5|G|4275
1VWW|1|5|G|4276
1VWW|1|5|G|4277
1VWW|1|5|C|4278
1VWW|1|5|A|4279
1VWW|1|5|A|4280
1VWW|1|5|A|4281
1VWW|1|5|A|4282
1VWW|1|5|G|4283
1VWW|1|5|C|4284
1VWW|1|5|U|4285
1VWW|1|5|C|4286
1VWW|1|5|G|4287
1VWW|1|5|C|4288
1VWW|1|5|U|4289
1VWW|1|5|U|4290
1VWW|1|5|G|4291
*
1VWW|1|5|C|4318
1VWW|1|5|C|4319
*
1VWW|1|5|G|4328
1VWW|1|5|G|4329
1VWW|1|5|G|4330
1VWW|1|5|G|4331
1VWW|1|5|C|4332
1VWW|1|5|C|4333
1VWW|1|5|U|4334
1VWW|1|5|C|4335
1VWW|1|5|A|4336
1VWW|1|5|C|4337
1VWW|1|5|G|4338
1VWW|1|5|A|4339
1VWW|1|5|U|4340
1VWW|1|5|C|4341
1VWW|1|5|C|4342
1VWW|1|5|U|4343
1VWW|1|5|U|4344
1VWW|1|5|C|4345
1VWW|1|5|U|4346
*
1VWW|1|5|A|4366
1VWW|1|5|G|4367
1VWW|1|5|G|4368
1VWW|1|5|A|4369
1VWW|1|5|G|4370
1VWW|1|5|G|4371
1VWW|1|5|U|4372
1VWW|1|5|G|4373
1VWW|1|5|U|4374
1VWW|1|5|C|4375
1VWW|1|5|A|4376
1VWW|1|5|G|4377
1VWW|1|5|A|4378
1VWW|1|5|A|4379
1VWW|1|5|A|4380
1VWW|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA
Coloring options: