J8_1Z58_001

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUA*UUUG*CG*CGCCCAAAGG*CUUGACU*AGGG*CGGGCUUAGUGAACC*GAUCAACGGAUAAAA

Length

61 nucleotides

Bulged bases

1Z58|1|2|U|2059, 1Z58|1|2|A|2265, 1Z58|1|2|A|2267, 1Z58|1|2|U|2369, 1Z58|1|2|G|2407, 1Z58|1|2|A|2409, 1Z58|1|2|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Z58|1|2|U|2057
1Z58|1|2|U|2058
1Z58|1|2|U|2059
1Z58|1|2|A|2060
*
1Z58|1|2|U|2222
1Z58|1|2|U|2223
1Z58|1|2|U|2224
1Z58|1|2|G|2225
*
1Z58|1|2|C|2237
1Z58|1|2|G|2238
*
1Z58|1|2|C|2260
1Z58|1|2|G|2261
1Z58|1|2|C|2262
1Z58|1|2|C|2263
1Z58|1|2|C|2264
1Z58|1|2|A|2265
1Z58|1|2|A|2266
1Z58|1|2|A|2267
1Z58|1|2|G|2268
1Z58|1|2|G|2269
*
1Z58|1|2|C|2321
1Z58|1|2|U|2322
1Z58|1|2|U|2323
1Z58|1|2|G|2324
1Z58|1|2|A|2325
1Z58|1|2|C|2326
1Z58|1|2|U|2327
*
1Z58|1|2|A|2348
1Z58|1|2|G|2349
1Z58|1|2|G|2350
1Z58|1|2|G|2351
*
1Z58|1|2|C|2360
1Z58|1|2|G|2361
1Z58|1|2|G|2362
1Z58|1|2|G|2363
1Z58|1|2|C|2364
1Z58|1|2|U|2365
1Z58|1|2|U|2366
1Z58|1|2|A|2367
1Z58|1|2|G|2368
1Z58|1|2|U|2369
1Z58|1|2|G|2370
1Z58|1|2|A|2371
1Z58|1|2|A|2372
1Z58|1|2|C|2373
1Z58|1|2|C|2374
*
1Z58|1|2|G|2400
1Z58|1|2|A|2401
1Z58|1|2|U|2402
1Z58|1|2|C|2403
1Z58|1|2|A|2404
1Z58|1|2|A|2405
1Z58|1|2|C|2406
1Z58|1|2|G|2407
1Z58|1|2|G|2408
1Z58|1|2|A|2409
1Z58|1|2|U|2410
1Z58|1|2|A|2411
1Z58|1|2|A|2412
1Z58|1|2|A|2413
1Z58|1|2|A|2414

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains