Loop J8_4TUB

3D structure

PDB id: 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGG*CCGGUAAG*CGAGGU
Length: 51 nucleotides
Bulged bases: 4TUB|1|RA|C|2043, 4TUB|1|RA|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4TUB|1|RA|A|8
4TUB|1|RA|U|9
4TUB|1|RA|G|10
4TUB|1|RA|G|11
4TUB|1|RA|U|12
4TUB|1|RA|A|13
4TUB|1|RA|A|14
4TUB|1|RA|G|15
*
4TUB|1|RA|U|550
4TUB|1|RA|A|551
4TUB|1|RA|C|552
4TUB|1|RA|A|553
4TUB|1|RA|A|554
4TUB|1|RA|G|555
4TUB|1|RA|C|556
*
4TUB|1|RA|G|2040
4TUB|1|RA|A|2041
4TUB|1|RA|A|2042
4TUB|1|RA|C|2043
4TUB|1|RA|U|2044
4TUB|1|RA|G|2045
*
4TUB|1|RA|C|2062
4TUB|1|RA|U|2063
4TUB|1|RA|A|2064
4TUB|1|RA|C|2065
*
4TUB|1|RA|G|2637
4TUB|1|RA|C|2638
4TUB|1|RA|G|2639
4TUB|1|RA|C|2640
4TUB|1|RA|A|2641
4TUB|1|RA|G|2642
*
4TUB|1|RA|C|2801
4TUB|1|RA|C|2802
4TUB|1|RA|A|2803
4TUB|1|RA|C|2804
4TUB|1|RA|G|2805
4TUB|1|RA|G|2806
*
4TUB|1|RA|C|2814
4TUB|1|RA|C|2815
4TUB|1|RA|G|2816
4TUB|1|RA|G|2817
4TUB|1|RA|U|2818
4TUB|1|RA|A|2819
4TUB|1|RA|A|2820
4TUB|1|RA|G|2821
*
4TUB|1|RA|C|2899
4TUB|1|RA|G|2900
4TUB|1|RA|A|2901
4TUB|1|RA|G|2902
4TUB|1|RA|G|2903
4TUB|1|RA|U|2904

Current chains

Chain RA: 23S rRNA

Nearby chains

Chain R5: 50S ribosomal protein L32
Chain RE: 50S ribosomal protein L3
Chain RN: 50S ribosomal protein L13
Chain RU: 50S ribosomal protein L20
Chain RW: 50S ribosomal protein L22

J8_4TUB_002