Loop J8_4V4I

3D structure

PDB id: 4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.71 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 4V4I|1|w|C|2021, 4V4I|1|w|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4I|1|w|A|8
4V4I|1|w|U|9
4V4I|1|w|G|10
4V4I|1|w|G|11
4V4I|1|w|U|12
4V4I|1|w|A|13
4V4I|1|w|A|14
4V4I|1|w|G|15
*
4V4I|1|w|U|525
4V4I|1|w|A|526
4V4I|1|w|C|527
4V4I|1|w|A|528
4V4I|1|w|A|529
4V4I|1|w|G|530
4V4I|1|w|C|531
*
4V4I|1|w|G|2018
4V4I|1|w|A|2019
4V4I|1|w|A|2020
4V4I|1|w|C|2021
4V4I|1|w|U|2022
4V4I|1|w|G|2023
*
4V4I|1|w|C|2040
4V4I|1|w|U|2041
4V4I|1|w|A|2042
4V4I|1|w|C|2043
*
4V4I|1|w|G|2625
4V4I|1|w|C|2626
4V4I|1|w|G|2627
4V4I|1|w|C|2628
4V4I|1|w|A|2629
4V4I|1|w|G|2630
*
4V4I|1|w|C|2788
4V4I|1|w|C|2789
4V4I|1|w|A|2790
4V4I|1|w|C|2791
*
4V4I|1|w|G|2805
4V4I|1|w|G|2807
4V4I|1|w|U|2808
4V4I|1|w|A|2809
4V4I|1|w|A|2810
4V4I|1|w|G|2811
*
4V4I|1|w|C|2889
4V4I|1|w|G|2891
4V4I|1|w|A|2892
4V4I|1|w|G|2893
4V4I|1|w|G|2894
4V4I|1|w|U|2895

Current chains

Chain w: 23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C: 50S ribosomal protein L3
Chain D: 50S ribosomal protein L4
Chain H: 50S ribosomal protein L13
Chain O: 50S ribosomal protein L20
Chain P: 50S ribosomal protein L21
Chain Q: 50S ribosomal protein L22
Chain Y: 50S ribosomal protein L32

J8_4V4I_001