3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
4V4J|1|w|G|530, 4V4J|1|w|C|2021, 4V4J|1|w|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4J|1|w|A|8
4V4J|1|w|U|9
4V4J|1|w|G|10
4V4J|1|w|G|11
4V4J|1|w|U|12
4V4J|1|w|A|13
4V4J|1|w|A|14
4V4J|1|w|G|15
*
4V4J|1|w|U|525
4V4J|1|w|A|526
4V4J|1|w|C|527
4V4J|1|w|A|528
4V4J|1|w|A|529
4V4J|1|w|G|530
4V4J|1|w|C|531
*
4V4J|1|w|G|2018
4V4J|1|w|A|2019
4V4J|1|w|A|2020
4V4J|1|w|C|2021
4V4J|1|w|U|2022
4V4J|1|w|G|2023
*
4V4J|1|w|C|2040
4V4J|1|w|U|2041
4V4J|1|w|A|2042
4V4J|1|w|C|2043
*
4V4J|1|w|G|2625
4V4J|1|w|C|2626
4V4J|1|w|G|2627
4V4J|1|w|C|2628
4V4J|1|w|A|2629
4V4J|1|w|G|2630
*
4V4J|1|w|C|2788
4V4J|1|w|C|2789
4V4J|1|w|A|2790
4V4J|1|w|C|2791
*
4V4J|1|w|G|2805
4V4J|1|w|G|2807
4V4J|1|w|U|2808
4V4J|1|w|A|2809
4V4J|1|w|A|2810
4V4J|1|w|G|2811
*
4V4J|1|w|C|2889
4V4J|1|w|G|2891
4V4J|1|w|A|2892
4V4J|1|w|G|2893
4V4J|1|w|G|2894
4V4J|1|w|U|2895

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain D
50S ribosomal protein L4
Chain H
50S ribosomal protein L13
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21
Chain Q
50S ribosomal protein L22
Chain Y
50S ribosomal protein L32

Coloring options:

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