J8_4V4P_001

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCCGAUGAAG*CGAAUG*CG*CACCGCGCUUUUGCGCGGGGGGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

72 nucleotides

Bulged bases

4V4P|1|AA|U|50, 4V4P|1|AA|U|161, 4V4P|1|AA|U|162, 4V4P|1|AA|A|221, 4V4P|1|AA|A|223, 4V4P|1|AA|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|G|45
4V4P|1|AA|C|46
4V4P|1|AA|C|47
4V4P|1|AA|G|48
4V4P|1|AA|A|49
4V4P|1|AA|U|50
4V4P|1|AA|G|51
4V4P|1|AA|A|52
4V4P|1|AA|A|53
4V4P|1|AA|G|54
*
4V4P|1|AA|C|116
4V4P|1|AA|G|117
4V4P|1|AA|A|118
4V4P|1|AA|A|119
4V4P|1|AA|U|120
4V4P|1|AA|G|121
*
4V4P|1|AA|C|130
4V4P|1|AA|G|131
*
4V4P|1|AA|C|148
4V4P|1|AA|A|149
4V4P|1|AA|C|150
4V4P|1|AA|C|151
4V4P|1|AA|G|152
4V4P|1|AA|C|153
4V4P|1|AA|G|154
4V4P|1|AA|C|155
4V4P|1|AA|U|161
4V4P|1|AA|U|162
4V4P|1|AA|U|163
4V4P|1|AA|U|164
4V4P|1|AA|G|171
4V4P|1|AA|C|172
4V4P|1|AA|G|173
4V4P|1|AA|C|174
4V4P|1|AA|G|175
4V4P|1|AA|G|176
4V4P|1|AA|G|177
4V4P|1|AA|G|178
4V4P|1|AA|G|179
4V4P|1|AA|G|180
4V4P|1|AA|A|181
4V4P|1|AA|A|182
4V4P|1|AA|C|183
*
4V4P|1|AA|G|214
4V4P|1|AA|G|215
4V4P|1|AA|A|216
4V4P|1|AA|G|217
4V4P|1|AA|A|218
4V4P|1|AA|G|219
4V4P|1|AA|G|220
4V4P|1|AA|A|221
4V4P|1|AA|A|222
4V4P|1|AA|A|223
4V4P|1|AA|G|224
*
4V4P|1|AA|C|231
4V4P|1|AA|G|232
4V4P|1|AA|A|233
4V4P|1|AA|C|234
4V4P|1|AA|U|235
*
4V4P|1|AA|A|262
4V4P|1|AA|C|263
4V4P|1|AA|C|264
4V4P|1|AA|A|265
4V4P|1|AA|G|266
*
4V4P|1|AA|C|426
4V4P|1|AA|U|427
4V4P|1|AA|A|428
4V4P|1|AA|A|429
4V4P|1|AA|G|430
4V4P|1|AA|U|431
4V4P|1|AA|A|432
4V4P|1|AA|C|433

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain A7

50S ribosomal protein L34

Chain AF

50S ribosomal protein L4