J8_4V5B_003
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCACGAAG*UUGAC*GGUG*CAGGUCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 59 nucleotides
- Bulged bases
- 4V5B|1|AB|U|2076, 4V5B|1|AB|A|2288, 4V5B|1|AB|G|2382, 4V5B|1|AB|G|2428, 4V5B|1|AB|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|AB|U|2074
4V5B|1|AB|U|2075
4V5B|1|AB|U|2076
4V5B|1|AB|A|2077
*
4V5B|1|AB|U|2243
4V5B|1|AB|U|2244
4V5B|1|AB|U|2245
4V5B|1|AB|G|2246
*
4V5B|1|AB|C|2258
4V5B|1|AB|U|2259
*
4V5B|1|AB|A|2281
4V5B|1|AB|G|2282
4V5B|1|AB|C|2283
4V5B|1|AB|A|2284
4V5B|1|AB|C|2285
4V5B|1|AB|G|2286
4V5B|1|AB|A|2287
4V5B|1|AB|A|2288
4V5B|1|AB|G|2289
*
4V5B|1|AB|U|2343
4V5B|1|AB|U|2344
4V5B|1|AB|G|2345
4V5B|1|AB|A|2346
4V5B|1|AB|C|2347
*
4V5B|1|AB|G|2370
4V5B|1|AB|G|2371
4V5B|1|AB|U|2372
4V5B|1|AB|G|2373
*
4V5B|1|AB|C|2380
4V5B|1|AB|A|2381
4V5B|1|AB|G|2382
4V5B|1|AB|G|2383
4V5B|1|AB|U|2384
4V5B|1|AB|C|2385
4V5B|1|AB|A|2386
4V5B|1|AB|U|2387
4V5B|1|AB|A|2388
4V5B|1|AB|G|2389
4V5B|1|AB|U|2390
4V5B|1|AB|G|2391
4V5B|1|AB|A|2392
4V5B|1|AB|U|2393
4V5B|1|AB|C|2394
4V5B|1|AB|C|2395
*
4V5B|1|AB|G|2421
4V5B|1|AB|C|2422
4V5B|1|AB|U|2423
4V5B|1|AB|C|2424
4V5B|1|AB|A|2425
4V5B|1|AB|A|2426
4V5B|1|AB|C|2427
4V5B|1|AB|G|2428
4V5B|1|AB|G|2429
4V5B|1|AB|A|2430
4V5B|1|AB|U|2431
4V5B|1|AB|A|2432
4V5B|1|AB|A|2433
4V5B|1|AB|A|2434
4V5B|1|AB|A|2435
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A1
- 50S RIBOSOMAL PROTEIN L33
- Chain A3
- 50S RIBOSOMAL PROTEIN L35
- Chain AC
- 50S RIBOSOMAL PROTEIN L2
- Chain AL
- 50S RIBOSOMAL PROTEIN L15
- Chain AO
- 50S RIBOSOMAL PROTEIN L18
- Chain AW
- 50S RIBOSOMAL PROTEIN L27
- Chain AZ
- 50S RIBOSOMAL PROTEIN L31
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