J8_4V61_001
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CUUUA*UUUC*GGC*GCGUGCAAAG*UUGAC*GGGA*UCGGCCUUAGUGAUCC*GCUCAACGGAUAAAAG
- Length
- 63 nucleotides
- Bulged bases
- 4V61|1|BA|U|2090, 4V61|1|BA|A|2303, 4V61|1|BA|A|2305, 4V61|1|BA|U|2440, 4V61|1|BA|A|2443, 4V61|1|BA|G|2445, 4V61|1|BA|A|2447, 4V61|1|BA|U|2448
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V61|1|BA|C|2087
4V61|1|BA|U|2088
4V61|1|BA|U|2089
4V61|1|BA|U|2090
4V61|1|BA|A|2091
*
4V61|1|BA|U|2260
4V61|1|BA|U|2261
4V61|1|BA|U|2262
4V61|1|BA|C|2263
*
4V61|1|BA|G|2275
4V61|1|BA|G|2276
4V61|1|BA|C|2277
*
4V61|1|BA|G|2297
4V61|1|BA|C|2298
4V61|1|BA|G|2299
4V61|1|BA|U|2300
4V61|1|BA|G|2301
4V61|1|BA|C|2302
4V61|1|BA|A|2303
4V61|1|BA|A|2304
4V61|1|BA|A|2305
4V61|1|BA|G|2306
*
4V61|1|BA|U|2360
4V61|1|BA|U|2361
4V61|1|BA|G|2362
4V61|1|BA|A|2363
4V61|1|BA|C|2364
*
4V61|1|BA|G|2387
4V61|1|BA|G|2388
4V61|1|BA|G|2389
4V61|1|BA|A|2390
*
4V61|1|BA|U|2397
4V61|1|BA|C|2398
4V61|1|BA|G|2399
4V61|1|BA|G|2400
4V61|1|BA|C|2401
4V61|1|BA|C|2402
4V61|1|BA|U|2403
4V61|1|BA|U|2404
4V61|1|BA|A|2405
4V61|1|BA|G|2406
4V61|1|BA|U|2407
4V61|1|BA|G|2408
4V61|1|BA|A|2409
4V61|1|BA|U|2410
4V61|1|BA|C|2411
4V61|1|BA|C|2412
*
4V61|1|BA|G|2438
4V61|1|BA|C|2439
4V61|1|BA|U|2440
4V61|1|BA|C|2441
4V61|1|BA|A|2442
4V61|1|BA|A|2443
4V61|1|BA|C|2444
4V61|1|BA|G|2445
4V61|1|BA|G|2446
4V61|1|BA|A|2447
4V61|1|BA|U|2448
4V61|1|BA|A|2449
4V61|1|BA|A|2450
4V61|1|BA|A|2451
4V61|1|BA|A|2452
4V61|1|BA|G|2453
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B3
- Ribosomal Protein L33
- Chain B5
- Ribosomal Protein L35
- Chain BE
- Ribosomal Protein L2
- Chain BN
- Ribosomal Protein L15
- Chain BQ
- Ribosomal Protein L18
- Chain BX
- Ribosomal Protein L27
- Chain BY
- Ribosomal Protein L28
Coloring options: