Loop J8_4V8J

3D structure

PDB id: 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the bacterial ribosome ram mutation G347U.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.9 Å

Loop

Sequence: GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGUC
Length: 51 nucleotides
Bulged bases: 4V8J|1|DA|G|530, 4V8J|1|DA|C|2021, 4V8J|1|DA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8J|1|DA|G|7
4V8J|1|DA|A|8
4V8J|1|DA|U|9
4V8J|1|DA|G|10
4V8J|1|DA|G|11
4V8J|1|DA|U|12
4V8J|1|DA|A|13
4V8J|1|DA|A|14
4V8J|1|DA|G|15
*
4V8J|1|DA|U|525
4V8J|1|DA|A|526
4V8J|1|DA|C|527
4V8J|1|DA|A|528
4V8J|1|DA|A|529
4V8J|1|DA|G|530
4V8J|1|DA|C|531
*
4V8J|1|DA|G|2018
4V8J|1|DA|A|2019
4V8J|1|DA|A|2020
4V8J|1|DA|C|2021
4V8J|1|DA|U|2022
4V8J|1|DA|G|2023
*
4V8J|1|DA|C|2040
4V8J|1|DA|U|2041
4V8J|1|DA|A|2042
4V8J|1|DA|C|2043
*
4V8J|1|DA|G|2625
4V8J|1|DA|C|2626
4V8J|1|DA|G|2627
4V8J|1|DA|C|2628
4V8J|1|DA|A|2629
4V8J|1|DA|G|2630
*
4V8J|1|DA|C|2788
4V8J|1|DA|C|2789
4V8J|1|DA|A|2790
4V8J|1|DA|C|2791
4V8J|1|DA|G|2792
*
4V8J|1|DA|C|2804
4V8J|1|DA|G|2805
4V8J|1|DA|G|2807
4V8J|1|DA|U|2808
4V8J|1|DA|A|2809
4V8J|1|DA|A|2810
4V8J|1|DA|G|2811
*
4V8J|1|DA|C|2889
4V8J|1|DA|G|2891
4V8J|1|DA|A|2892
4V8J|1|DA|G|2893
4V8J|1|DA|G|2894
4V8J|1|DA|U|2895
4V8J|1|DA|C|2896

Current chains

Chain DA: 23S rRNA

Nearby chains

Chain D5: 50S ribosomal protein L32
Chain DE: 50S ribosomal protein L3
Chain DN: 50S ribosomal protein L13
Chain DU: 50S ribosomal protein L20
Chain DW: 50S ribosomal protein L22

J8_4V8J_002