J8_4V9A_002

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

47 nucleotides

Bulged bases

4V9A|1|DA|G|530, 4V9A|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9A|1|DA|A|8
4V9A|1|DA|U|9
4V9A|1|DA|G|10
4V9A|1|DA|G|11
4V9A|1|DA|U|12
4V9A|1|DA|A|13
4V9A|1|DA|A|14
4V9A|1|DA|G|15
*
4V9A|1|DA|U|525
4V9A|1|DA|A|526
4V9A|1|DA|C|527
4V9A|1|DA|A|528
4V9A|1|DA|A|529
4V9A|1|DA|G|530
4V9A|1|DA|C|531
*
4V9A|1|DA|G|2018
4V9A|1|DA|A|2019
4V9A|1|DA|A|2020
4V9A|1|DA|C|2021
4V9A|1|DA|U|2022
4V9A|1|DA|G|2023
*
4V9A|1|DA|C|2040
4V9A|1|DA|U|2041
4V9A|1|DA|A|2042
4V9A|1|DA|C|2043
*
4V9A|1|DA|G|2625
4V9A|1|DA|C|2626
4V9A|1|DA|G|2627
4V9A|1|DA|C|2628
4V9A|1|DA|A|2629
4V9A|1|DA|G|2630
*
4V9A|1|DA|C|2788
4V9A|1|DA|C|2789
4V9A|1|DA|A|2790
4V9A|1|DA|C|2791
*
4V9A|1|DA|G|2805
4V9A|1|DA|G|2807
4V9A|1|DA|U|2808
4V9A|1|DA|A|2809
4V9A|1|DA|A|2810
4V9A|1|DA|G|2811
*
4V9A|1|DA|C|2889
4V9A|1|DA|G|2891
4V9A|1|DA|A|2892
4V9A|1|DA|G|2893
4V9A|1|DA|G|2894
4V9A|1|DA|U|2895

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L20

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DM

50S ribosomal protein L13

Chain DS

50S ribosomal protein L22