J8_4V9L_003

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU

Length

49 nucleotides

Bulged bases

4V9L|1|DA|C|527, 4V9L|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9L|1|DA|A|8
4V9L|1|DA|U|9
4V9L|1|DA|G|10
4V9L|1|DA|G|11
4V9L|1|DA|U|12
4V9L|1|DA|A|13
4V9L|1|DA|A|14
4V9L|1|DA|G|15
*
4V9L|1|DA|U|525
4V9L|1|DA|A|526
4V9L|1|DA|C|527
4V9L|1|DA|A|528
4V9L|1|DA|A|529
4V9L|1|DA|G|530
4V9L|1|DA|C|531
*
4V9L|1|DA|G|2018
4V9L|1|DA|A|2019
4V9L|1|DA|A|2020
4V9L|1|DA|C|2021
4V9L|1|DA|U|2022
4V9L|1|DA|G|2023
*
4V9L|1|DA|C|2040
4V9L|1|DA|U|2041
4V9L|1|DA|A|2042
4V9L|1|DA|C|2043
*
4V9L|1|DA|G|2625
4V9L|1|DA|C|2626
4V9L|1|DA|G|2627
4V9L|1|DA|C|2628
4V9L|1|DA|A|2629
4V9L|1|DA|G|2630
*
4V9L|1|DA|C|2788
4V9L|1|DA|C|2789
4V9L|1|DA|A|2790
4V9L|1|DA|C|2791
4V9L|1|DA|G|2792
*
4V9L|1|DA|C|2804
4V9L|1|DA|G|2805
4V9L|1|DA|G|2807
4V9L|1|DA|U|2808
4V9L|1|DA|A|2809
4V9L|1|DA|A|2810
4V9L|1|DA|G|2811
*
4V9L|1|DA|C|2889
4V9L|1|DA|G|2891
4V9L|1|DA|A|2892
4V9L|1|DA|G|2893
4V9L|1|DA|G|2894
4V9L|1|DA|U|2895

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22