Loop J8_4W21

3D structure

PDB id: 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: UUGA*UUUGA*UACA*UGUCCUAAGGC*GCUUG*CC*GGGGCCUCACGAUCCUUC*GGAGGUGUCAGAAAA
Length: 64 nucleotides
Bulged bases: 4W21|1|5|G|3922, 4W21|1|5|A|4203, 4W21|1|5|C|4332, 4W21|1|5|A|4376, 4W21|1|5|A|4378, 4W21|1|5|A|4379
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4W21|1|5|U|3920
4W21|1|5|U|3921
4W21|1|5|G|3922
4W21|1|5|A|3923
*
4W21|1|5|U|4188
4W21|1|5|U|4189
4W21|1|5|U|4190
4W21|1|5|G|4191
4W21|1|5|A|4192
*
4W21|1|5|U|4202
4W21|1|5|A|4203
4W21|1|5|C|4204
4W21|1|5|A|4205
*
4W21|1|5|U|4227
4W21|1|5|G|4228
4W21|1|5|U|4229
4W21|1|5|C|4230
4W21|1|5|C|4231
4W21|1|5|U|4232
4W21|1|5|A|4233
4W21|1|5|A|4234
4W21|1|5|G|4235
4W21|1|5|G|4236
4W21|1|5|C|4237
*
4W21|1|5|G|4287
4W21|1|5|C|4288
4W21|1|5|U|4289
4W21|1|5|U|4290
4W21|1|5|G|4291
*
4W21|1|5|C|4318
4W21|1|5|C|4319
*
4W21|1|5|G|4328
4W21|1|5|G|4329
4W21|1|5|G|4330
4W21|1|5|G|4331
4W21|1|5|C|4332
4W21|1|5|C|4333
4W21|1|5|U|4334
4W21|1|5|C|4335
4W21|1|5|A|4336
4W21|1|5|C|4337
4W21|1|5|G|4338
4W21|1|5|A|4339
4W21|1|5|U|4340
4W21|1|5|C|4341
4W21|1|5|C|4342
4W21|1|5|U|4343
4W21|1|5|U|4344
4W21|1|5|C|4345
*
4W21|1|5|G|4367
4W21|1|5|G|4368
4W21|1|5|A|4369
4W21|1|5|G|4370
4W21|1|5|G|4371
4W21|1|5|U|4372
4W21|1|5|G|4373
4W21|1|5|U|4374
4W21|1|5|C|4375
4W21|1|5|A|4376
4W21|1|5|G|4377
4W21|1|5|A|4378
4W21|1|5|A|4379
4W21|1|5|A|4380
4W21|1|5|A|4381

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

No other chains within 10Å

J8_4W21_001