J8_4W29_001

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AUGGUAAGG*UUACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU

Length

51 nucleotides

Bulged bases

4W29|1|DA|C|527, 4W29|1|DA|C|2021, 4W29|1|DA|G|2894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|DA|A|8
4W29|1|DA|U|9
4W29|1|DA|G|10
4W29|1|DA|G|11
4W29|1|DA|U|12
4W29|1|DA|A|13
4W29|1|DA|A|14
4W29|1|DA|G|15
4W29|1|DA|G|16
*
4W29|1|DA|U|524
4W29|1|DA|U|525
4W29|1|DA|A|526
4W29|1|DA|C|527
4W29|1|DA|A|528
4W29|1|DA|A|529
4W29|1|DA|G|530
4W29|1|DA|C|531
*
4W29|1|DA|G|2018
4W29|1|DA|A|2019
4W29|1|DA|A|2020
4W29|1|DA|C|2021
4W29|1|DA|U|2022
4W29|1|DA|G|2023
*
4W29|1|DA|C|2040
4W29|1|DA|U|2041
4W29|1|DA|A|2042
4W29|1|DA|C|2043
*
4W29|1|DA|G|2625
4W29|1|DA|C|2626
4W29|1|DA|G|2627
4W29|1|DA|C|2628
4W29|1|DA|A|2629
4W29|1|DA|G|2630
*
4W29|1|DA|C|2788
4W29|1|DA|C|2789
4W29|1|DA|A|2790
4W29|1|DA|C|2791
4W29|1|DA|G|2792
*
4W29|1|DA|C|2804
4W29|1|DA|G|2805
4W29|1|DA|G|2807
4W29|1|DA|U|2808
4W29|1|DA|A|2809
4W29|1|DA|A|2810
4W29|1|DA|G|2811
*
4W29|1|DA|C|2889
4W29|1|DA|G|2890
4W29|1|DA|A|2892
4W29|1|DA|G|2893
4W29|1|DA|G|2894
4W29|1|DA|U|2895

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22