J8_4XEJ_001

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUGGUAAGGGC*GCUUACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGUC

Length

57 nucleotides

Bulged bases

4XEJ|1|A23S|U|12, 4XEJ|1|A23S|G|530, 4XEJ|1|A23S|C|2021, 4XEJ|1|A23S|A|2790, 4XEJ|1|A23S|C|2791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|G|7
4XEJ|1|A23S|A|8
4XEJ|1|A23S|U|9
4XEJ|1|A23S|G|10
4XEJ|1|A23S|G|11
4XEJ|1|A23S|U|12
4XEJ|1|A23S|A|13
4XEJ|1|A23S|A|14
4XEJ|1|A23S|G|15
4XEJ|1|A23S|G|16
4XEJ|1|A23S|G|17
4XEJ|1|A23S|C|18
*
4XEJ|1|A23S|G|522
4XEJ|1|A23S|C|523
4XEJ|1|A23S|U|524
4XEJ|1|A23S|U|525
4XEJ|1|A23S|A|526
4XEJ|1|A23S|C|527
4XEJ|1|A23S|A|528
4XEJ|1|A23S|A|529
4XEJ|1|A23S|G|530
4XEJ|1|A23S|C|531
*
4XEJ|1|A23S|G|2018
4XEJ|1|A23S|A|2019
4XEJ|1|A23S|A|2020
4XEJ|1|A23S|C|2021
4XEJ|1|A23S|U|2022
4XEJ|1|A23S|G|2023
*
4XEJ|1|A23S|C|2040
4XEJ|1|A23S|U|2041
4XEJ|1|A23S|A|2042
4XEJ|1|A23S|C|2043
*
4XEJ|1|A23S|G|2625
4XEJ|1|A23S|C|2626
4XEJ|1|A23S|G|2627
4XEJ|1|A23S|C|2628
4XEJ|1|A23S|A|2629
4XEJ|1|A23S|G|2630
*
4XEJ|1|A23S|C|2788
4XEJ|1|A23S|C|2789
4XEJ|1|A23S|A|2790
4XEJ|1|A23S|C|2791
4XEJ|1|A23S|G|2792
*
4XEJ|1|A23S|C|2804
4XEJ|1|A23S|G|2805
4XEJ|1|A23S|G|2807
4XEJ|1|A23S|U|2808
4XEJ|1|A23S|A|2809
4XEJ|1|A23S|A|2810
4XEJ|1|A23S|G|2811
*
4XEJ|1|A23S|C|2889
4XEJ|1|A23S|G|2890
4XEJ|1|A23S|A|2892
4XEJ|1|A23S|G|2893
4XEJ|1|A23S|G|2894
4XEJ|1|A23S|U|2895
4XEJ|1|A23S|C|2896

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL13

50S ribosomal protein L13

Chain AL20

50S ribosomal protein L20

Chain AL22

50S ribosomal protein L22

Chain AL32

50S ribosomal protein L32