J8_5LKS_002
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAACUAACCAGGAUU*AAGAGCCCAGCGCC*GGCGUACG*CCGGAGUCG*CAAAGCGGG*UCUAAGGCUAAAUAC*GUC
- Length
- 86 nucleotides
- Bulged bases
- 5LKS|1|L5|C|72, 5LKS|1|L5|C|115, 5LKS|1|L5|C|159, 5LKS|1|L5|C|309, 5LKS|1|L8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|L5|G|21
5LKS|1|L5|G|22
5LKS|1|L5|C|23
5LKS|1|L5|G|24
5LKS|1|L5|A|25
5LKS|1|L5|C|26
*
5LKS|1|L5|G|57
5LKS|1|L5|G|58
5LKS|1|L5|A|59
5LKS|1|L5|G|60
5LKS|1|L5|A|61
5LKS|1|L5|A|62
5LKS|1|L5|G|63
5LKS|1|L5|A|64
5LKS|1|L5|A|65
5LKS|1|L5|A|66
5LKS|1|L5|C|67
5LKS|1|L5|U|68
5LKS|1|L5|A|69
5LKS|1|L5|A|70
5LKS|1|L5|C|71
5LKS|1|L5|C|72
5LKS|1|L5|A|73
5LKS|1|L5|G|74
5LKS|1|L5|G|75
5LKS|1|L5|A|76
5LKS|1|L5|U|77
5LKS|1|L5|U|78
*
5LKS|1|L5|A|105
5LKS|1|L5|A|106
5LKS|1|L5|G|107
5LKS|1|L5|A|108
5LKS|1|L5|G|109
5LKS|1|L5|C|110
5LKS|1|L5|C|111
5LKS|1|L5|C|112
5LKS|1|L5|A|113
5LKS|1|L5|G|114
5LKS|1|L5|C|115
5LKS|1|L5|G|116
5LKS|1|L5|C|117
5LKS|1|L5|C|118
*
5LKS|1|L5|G|153
5LKS|1|L5|G|154
5LKS|1|L5|C|155
5LKS|1|L5|G|156
5LKS|1|L5|U|157
5LKS|1|L5|A|158
5LKS|1|L5|C|159
5LKS|1|L5|G|160
*
5LKS|1|L5|C|275
5LKS|1|L5|C|276
5LKS|1|L5|G|277
5LKS|1|L5|G|278
5LKS|1|L5|A|279
5LKS|1|L5|G|280
5LKS|1|L5|U|281
5LKS|1|L5|C|282
5LKS|1|L5|G|283
*
5LKS|1|L5|C|304
5LKS|1|L5|A|305
5LKS|1|L5|A|306
5LKS|1|L5|A|307
5LKS|1|L5|G|308
5LKS|1|L5|C|309
5LKS|1|L5|G|310
5LKS|1|L5|G|311
5LKS|1|L5|G|312
*
5LKS|1|L5|U|325
5LKS|1|L5|C|326
5LKS|1|L5|U|327
5LKS|1|L5|A|328
5LKS|1|L5|A|329
5LKS|1|L5|G|330
5LKS|1|L5|G|331
5LKS|1|L5|C|332
5LKS|1|L5|U|333
5LKS|1|L5|A|334
5LKS|1|L5|A|335
5LKS|1|L5|A|336
5LKS|1|L5|U|337
5LKS|1|L5|A|338
5LKS|1|L5|C|339
*
5LKS|1|L8|G|33
5LKS|1|L8|U|34
5LKS|1|L8|C|35
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- 60S ribosomal protein L37
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