Loop J8_5O60

3D structure

PDB id: 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5O60|1|A|U|5
5O60|1|A|G|6
5O60|1|A|U|7
5O60|1|A|U|8
5O60|1|A|U|9
5O60|1|A|A|10
5O60|1|A|A|11
5O60|1|A|G|12
*
5O60|1|A|U|612
5O60|1|A|A|613
5O60|1|A|C|614
5O60|1|A|A|615
5O60|1|A|A|616
5O60|1|A|U|617
5O60|1|A|C|618
*
5O60|1|A|G|2242
5O60|1|A|C|2243
5O60|1|A|A|2244
5O60|1|A|C|2245
5O60|1|A|U|2246
5O60|1|A|A|2247
*
5O60|1|A|U|2264
5O60|1|A|U|2265
5O60|1|A|A|2266
5O60|1|A|C|2267
*
5O60|1|A|G|2849
5O60|1|A|C|2850
5O60|1|A|G|2851
5O60|1|A|U|2852
5O60|1|A|C|2853
5O60|1|A|A|2854
*
5O60|1|A|U|3012
5O60|1|A|C|3013
5O60|1|A|A|3014
5O60|1|A|C|3015
*
5O60|1|A|G|3027
5O60|1|A|A|3028
5O60|1|A|U|3029
5O60|1|A|A|3030
5O60|1|A|A|3031
5O60|1|A|G|3032
*
5O60|1|A|C|3110
5O60|1|A|G|3111
5O60|1|A|A|3112
5O60|1|A|A|3113
5O60|1|A|A|3114
5O60|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain D: 50S ribosomal protein L3
Chain K: 50S ribosomal protein L13
Chain R: 50S ribosomal protein L20
Chain T: 50S ribosomal protein L22
Chain b: 50S ribosomal protein L32

J8_5O60_001