Loop J8_5V7Q

3D structure

PDB id: 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: GUGUCUAAGG*CUACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAAC
Length: 51 nucleotides
Bulged bases: 5V7Q|1|A|U|618, 5V7Q|1|A|C|2259, 5V7Q|1|A|A|3028
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5V7Q|1|A|G|7
5V7Q|1|A|U|8
5V7Q|1|A|G|9
5V7Q|1|A|U|10
5V7Q|1|A|C|11
5V7Q|1|A|U|12
5V7Q|1|A|A|13
5V7Q|1|A|A|14
5V7Q|1|A|G|15
5V7Q|1|A|G|16
*
5V7Q|1|A|C|612
5V7Q|1|A|U|613
5V7Q|1|A|A|614
5V7Q|1|A|C|615
5V7Q|1|A|A|616
5V7Q|1|A|A|617
5V7Q|1|A|U|618
5V7Q|1|A|C|619
*
5V7Q|1|A|G|2256
5V7Q|1|A|C|2257
5V7Q|1|A|A|2258
5V7Q|1|A|C|2259
5V7Q|1|A|U|2260
5V7Q|1|A|A|2261
*
5V7Q|1|A|U|2278
5V7Q|1|A|U|2279
5V7Q|1|A|A|2280
5V7Q|1|A|C|2281
*
5V7Q|1|A|G|2863
5V7Q|1|A|C|2864
5V7Q|1|A|G|2865
5V7Q|1|A|U|2866
5V7Q|1|A|C|2867
5V7Q|1|A|A|2868
*
5V7Q|1|A|U|3026
5V7Q|1|A|C|3027
5V7Q|1|A|A|3028
5V7Q|1|A|C|3029
*
5V7Q|1|A|G|3041
5V7Q|1|A|A|3042
5V7Q|1|A|U|3043
5V7Q|1|A|A|3044
5V7Q|1|A|A|3045
5V7Q|1|A|G|3046
*
5V7Q|1|A|C|3124
5V7Q|1|A|G|3125
5V7Q|1|A|A|3126
5V7Q|1|A|A|3127
5V7Q|1|A|A|3128
5V7Q|1|A|A|3129
5V7Q|1|A|C|3130

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain J: 50S ribosomal protein L13
Chain Q: 50S ribosomal protein L20
Chain S: 50S ribosomal protein L22

J8_5V7Q_001