Loop J8_6HA1

3D structure

PDB id: 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UUAGAAAG*UACAAGU*AUAGUA*UUAC*GCGCAG*CCAU*AGUAAG*CGAGGA
Length: 47 nucleotides
Bulged bases: 6HA1|1|A|G|576, 6HA1|1|A|G|2050
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HA1|1|A|U|8
6HA1|1|A|U|9
6HA1|1|A|A|10
6HA1|1|A|G|11
6HA1|1|A|A|12
6HA1|1|A|A|13
6HA1|1|A|A|14
6HA1|1|A|G|15
*
6HA1|1|A|U|571
6HA1|1|A|A|572
6HA1|1|A|C|573
6HA1|1|A|A|574
6HA1|1|A|A|575
6HA1|1|A|G|576
6HA1|1|A|U|577
*
6HA1|1|A|A|2047
6HA1|1|A|U|2048
6HA1|1|A|A|2049
6HA1|1|A|G|2050
6HA1|1|A|U|2051
6HA1|1|A|A|2052
*
6HA1|1|A|U|2069
6HA1|1|A|U|2070
6HA1|1|A|A|2071
6HA1|1|A|C|2072
*
6HA1|1|A|G|2654
6HA1|1|A|C|2655
6HA1|1|A|G|2656
6HA1|1|A|C|2657
6HA1|1|A|A|2658
6HA1|1|A|G|2659
*
6HA1|1|A|C|2817
6HA1|1|A|C|2818
6HA1|1|A|A|2819
6HA1|1|A|U|2820
*
6HA1|1|A|A|2831
6HA1|1|A|G|2832
6HA1|1|A|U|2833
6HA1|1|A|A|2834
6HA1|1|A|A|2835
6HA1|1|A|G|2836
*
6HA1|1|A|C|2914
6HA1|1|A|G|2915
6HA1|1|A|A|2916
6HA1|1|A|G|2917
6HA1|1|A|G|2918
6HA1|1|A|A|2919

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain J: 50S ribosomal protein L13
Chain Q: 50S ribosomal protein L20
Chain S: 50S ribosomal protein L22

J8_6HA1_001