J8_6HCJ_002
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAUUAAGCCAUGCAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCCCUAUCAAC*GUGACCACGGGUGACGGGG*CGAUUCCGGAGAG*CACAU*AAGGCAGCAGGCGCGCAAAUUA*UAGU
- Length
- 118 nucleotides
- Bulged bases
- 6HCJ|1|A2|A|45, 6HCJ|1|A2|A|92, 6HCJ|1|A2|U|361, 6HCJ|1|A2|C|399, 6HCJ|1|A2|G|407, 6HCJ|1|A2|U|427, 6HCJ|1|A2|U|428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|A2|A|40
6HCJ|1|A2|G|41
6HCJ|1|A2|A|42
6HCJ|1|A2|U|43
6HCJ|1|A2|U|44
6HCJ|1|A2|A|45
6HCJ|1|A2|A|46
6HCJ|1|A2|G|47
6HCJ|1|A2|C|48
6HCJ|1|A2|C|49
6HCJ|1|A2|A|50
6HCJ|1|A2|U|51
6HCJ|1|A2|G|52
6HCJ|1|A2|C|53
6HCJ|1|A2|A|54
6HCJ|1|A2|U|55
6HCJ|1|A2|G|56
6HCJ|1|A2|U|57
6HCJ|1|A2|C|58
6HCJ|1|A2|U|59
6HCJ|1|A2|A|60
6HCJ|1|A2|A|61
6HCJ|1|A2|G|62
*
6HCJ|1|A2|C|86
6HCJ|1|A2|U|87
6HCJ|1|A2|G|88
6HCJ|1|A2|C|89
6HCJ|1|A2|G|90
6HCJ|1|A2|A|91
6HCJ|1|A2|A|92
6HCJ|1|A2|U|93
6HCJ|1|A2|G|94
6HCJ|1|A2|G|95
6HCJ|1|A2|C|96
6HCJ|1|A2|U|97
6HCJ|1|A2|C|98
6HCJ|1|A2|A|99
6HCJ|1|A2|U|100
6HCJ|1|A2|U|101
6HCJ|1|A2|A|102
6HCJ|1|A2|A|103
6HCJ|1|A2|A|104
6HCJ|1|A2|U|105
6HCJ|1|A2|C|106
*
6HCJ|1|A2|G|355
6HCJ|1|A2|C|356
6HCJ|1|A2|C|357
6HCJ|1|A2|C|358
6HCJ|1|A2|U|359
6HCJ|1|A2|A|360
6HCJ|1|A2|U|361
6HCJ|1|A2|C|362
6HCJ|1|A2|A|363
6HCJ|1|A2|A|364
6HCJ|1|A2|C|365
*
6HCJ|1|A2|G|395
6HCJ|1|A2|U|396
6HCJ|1|A2|G|397
6HCJ|1|A2|A|398
6HCJ|1|A2|C|399
6HCJ|1|A2|C|400
6HCJ|1|A2|A|401
6HCJ|1|A2|C|402
6HCJ|1|A2|G|403
6HCJ|1|A2|G|404
6HCJ|1|A2|G|405
6HCJ|1|A2|U|406
6HCJ|1|A2|G|407
6HCJ|1|A2|A|408
6HCJ|1|A2|C|409
6HCJ|1|A2|G|410
6HCJ|1|A2|G|411
6HCJ|1|A2|G|412
6HCJ|1|A2|G|413
*
6HCJ|1|A2|C|424
6HCJ|1|A2|G|425
6HCJ|1|A2|A|426
6HCJ|1|A2|U|427
6HCJ|1|A2|U|428
6HCJ|1|A2|C|429
6HCJ|1|A2|C|430
6HCJ|1|A2|G|431
6HCJ|1|A2|G|432
6HCJ|1|A2|A|433
6HCJ|1|A2|G|434
6HCJ|1|A2|A|435
6HCJ|1|A2|G|436
*
6HCJ|1|A2|C|457
6HCJ|1|A2|A|458
6HCJ|1|A2|C|459
6HCJ|1|A2|A|460
6HCJ|1|A2|U|461
*
6HCJ|1|A2|A|468
6HCJ|1|A2|A|469
6HCJ|1|A2|G|470
6HCJ|1|A2|G|471
6HCJ|1|A2|C|472
6HCJ|1|A2|A|473
6HCJ|1|A2|G|474
6HCJ|1|A2|C|475
6HCJ|1|A2|A|476
6HCJ|1|A2|G|477
6HCJ|1|A2|G|478
6HCJ|1|A2|C|479
6HCJ|1|A2|G|480
6HCJ|1|A2|C|481
6HCJ|1|A2|G|482
6HCJ|1|A2|C|483
6HCJ|1|A2|A|484
6HCJ|1|A2|A|485
6HCJ|1|A2|A|486
6HCJ|1|A2|U|487
6HCJ|1|A2|U|488
6HCJ|1|A2|A|489
*
6HCJ|1|A2|U|511
6HCJ|1|A2|A|512
6HCJ|1|A2|G|513
6HCJ|1|A2|U|514
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain F2
- eS4
- Chain H2
- 40S ribosomal protein S6
- Chain J2
- eS8
- Chain K2
- Ribosomal protein S9 (Predicted)
- Chain M2
- Ribosomal protein S11
- Chain V3
- Ribosomal protein L23
- Chain Y2
- uS12
- Chain Z2
- eS24
Coloring options: