Loop J8_6HCQ

3D structure

PDB id: 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit collided di-ribosome (collided monosome)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.5 Å

Loop

Sequence: GGAAAGAAGACCCUGUUGAGCUUGAC*GUUUG*CACCUGUCAAACGGUAACGCAGGUGUCC*GGCCUCACGAUCC*GGUGUCAGAAAAGUUACCACAGGGAUAACUG*CUUCGAUGUCGG*CUGGGUUUAG*UAGUUUUACCC
Length: 136 nucleotides
Bulged bases: 6HCQ|1|51|A|3908, 6HCQ|1|51|C|3910, 6HCQ|1|51|G|3922, 6HCQ|1|51|A|4214, 6HCQ|1|51|C|4221, 6HCQ|1|51|A|4376, 6HCQ|1|51|A|4379, 6HCQ|1|51|A|4380, 6HCQ|1|51|A|4385, 6HCQ|1|51|A|4394, 6HCQ|1|51|U|4395, 6HCQ|1|51|G|4451, 6HCQ|1|51|U|4532, 6HCQ|1|51|U|4555, 6HCQ|1|51|C|4560
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCQ|1|51|G|3899
6HCQ|1|51|G|3900
6HCQ|1|51|A|3901
6HCQ|1|51|A|3902
6HCQ|1|51|A|3903
6HCQ|1|51|G|3904
6HCQ|1|51|A|3905
6HCQ|1|51|A|3906
6HCQ|1|51|G|3907
6HCQ|1|51|A|3908
6HCQ|1|51|C|3909
6HCQ|1|51|C|3910
6HCQ|1|51|C|3911
6HCQ|1|51|U|3912
6HCQ|1|51|G|3913
6HCQ|1|51|U|3914
6HCQ|1|51|U|3915
6HCQ|1|51|G|3916
6HCQ|1|51|A|3917
6HCQ|1|51|G|3918
6HCQ|1|51|C|3919
6HCQ|1|51|U|3920
6HCQ|1|51|U|3921
6HCQ|1|51|G|3922
6HCQ|1|51|A|3923
6HCQ|1|51|C|3924
*
6HCQ|1|51|G|4187
6HCQ|1|51|U|4188
6HCQ|1|51|U|4189
6HCQ|1|51|U|4190
6HCQ|1|51|G|4191
*
6HCQ|1|51|C|4204
6HCQ|1|51|A|4205
6HCQ|1|51|C|4206
6HCQ|1|51|C|4207
6HCQ|1|51|U|4208
6HCQ|1|51|G|4209
6HCQ|1|51|U|4210
6HCQ|1|51|C|4211
6HCQ|1|51|A|4212
6HCQ|1|51|A|4213
6HCQ|1|51|A|4214
6HCQ|1|51|C|4215
6HCQ|1|51|G|4216
6HCQ|1|51|G|4217
6HCQ|1|51|U|4218
6HCQ|1|51|A|4219
6HCQ|1|51|A|4220
6HCQ|1|51|C|4221
6HCQ|1|51|G|4222
6HCQ|1|51|C|4223
6HCQ|1|51|A|4224
6HCQ|1|51|G|4225
6HCQ|1|51|G|4226
6HCQ|1|51|U|4227
6HCQ|1|51|G|4228
6HCQ|1|51|U|4229
6HCQ|1|51|C|4230
6HCQ|1|51|C|4231
*
6HCQ|1|51|G|4330
6HCQ|1|51|G|4331
6HCQ|1|51|C|4332
6HCQ|1|51|C|4333
6HCQ|1|51|U|4334
6HCQ|1|51|C|4335
6HCQ|1|51|A|4336
6HCQ|1|51|C|4337
6HCQ|1|51|G|4338
6HCQ|1|51|A|4339
6HCQ|1|51|U|4340
6HCQ|1|51|C|4341
6HCQ|1|51|C|4342
*
6HCQ|1|51|G|4370
6HCQ|1|51|G|4371
6HCQ|1|51|U|4372
6HCQ|1|51|G|4373
6HCQ|1|51|U|4374
6HCQ|1|51|C|4375
6HCQ|1|51|A|4376
6HCQ|1|51|G|4377
6HCQ|1|51|A|4378
6HCQ|1|51|A|4379
6HCQ|1|51|A|4380
6HCQ|1|51|A|4381
6HCQ|1|51|G|4382
6HCQ|1|51|U|4383
6HCQ|1|51|U|4384
6HCQ|1|51|A|4385
6HCQ|1|51|C|4386
6HCQ|1|51|C|4387
6HCQ|1|51|A|4388
6HCQ|1|51|C|4389
6HCQ|1|51|A|4390
6HCQ|1|51|G|4391
6HCQ|1|51|G|4392
6HCQ|1|51|G|4393
6HCQ|1|51|A|4394
6HCQ|1|51|U|4395
6HCQ|1|51|A|4396
6HCQ|1|51|A|4397
6HCQ|1|51|C|4398
6HCQ|1|51|U|4399
6HCQ|1|51|G|4400
*
6HCQ|1|51|C|4444
6HCQ|1|51|U|4445
6HCQ|1|51|U|4446
6HCQ|1|51|C|4447
6HCQ|1|51|G|4448
6HCQ|1|51|A|4449
6HCQ|1|51|U|4450
6HCQ|1|51|G|4451
6HCQ|1|51|U|4452
6HCQ|1|51|C|4453
6HCQ|1|51|G|4454
6HCQ|1|51|G|4455
*
6HCQ|1|51|C|4525
6HCQ|1|51|U|4526
6HCQ|1|51|G|4527
6HCQ|1|51|G|4528
6HCQ|1|51|G|4529
6HCQ|1|51|U|4530
6HCQ|1|51|U|4531
6HCQ|1|51|U|4532
6HCQ|1|51|A|4533
6HCQ|1|51|G|4534
*
6HCQ|1|51|U|4552
6HCQ|1|51|A|4553
6HCQ|1|51|G|4554
6HCQ|1|51|U|4555
6HCQ|1|51|U|4556
6HCQ|1|51|U|4557
6HCQ|1|51|U|4558
6HCQ|1|51|A|4559
6HCQ|1|51|C|4560
6HCQ|1|51|C|4561
6HCQ|1|51|C|4562

Current chains

Chain 51: 28S ribosomal RNA

Nearby chains

Chain 1: nascent chain
Chain 33: Transfer RNA; tRNA
Chain A3: Ribosomal protein L8
Chain B3: uL3
Chain C3: uL4
Chain I3: 60S ribosomal protein L10
Chain N3: Ribosomal protein L15
Chain P3: uL22
Chain Q3: eL18
Chain T3: eL21
Chain V3: Ribosomal protein L23
Chain a3: uL15
Chain b3: eL29
Chain o3: eL42
Chain q3: Transfer RNA; tRNA

J8_6HCQ_001