J8_6HCQ_002
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- AGAUUAAGCCAUGCAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCCCUAUCAAC*GUGACCACGGGUGACGGGG*CGAUUCCGGAGAG*CACAU*AAGGCAGCAGGCGCGCAAAUUA*UAGU
- Length
- 118 nucleotides
- Bulged bases
- 6HCQ|1|A2|A|45, 6HCQ|1|A2|A|92, 6HCQ|1|A2|U|361, 6HCQ|1|A2|C|399, 6HCQ|1|A2|G|407, 6HCQ|1|A2|U|427, 6HCQ|1|A2|U|428
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|A|40
6HCQ|1|A2|G|41
6HCQ|1|A2|A|42
6HCQ|1|A2|U|43
6HCQ|1|A2|U|44
6HCQ|1|A2|A|45
6HCQ|1|A2|A|46
6HCQ|1|A2|G|47
6HCQ|1|A2|C|48
6HCQ|1|A2|C|49
6HCQ|1|A2|A|50
6HCQ|1|A2|U|51
6HCQ|1|A2|G|52
6HCQ|1|A2|C|53
6HCQ|1|A2|A|54
6HCQ|1|A2|U|55
6HCQ|1|A2|G|56
6HCQ|1|A2|U|57
6HCQ|1|A2|C|58
6HCQ|1|A2|U|59
6HCQ|1|A2|A|60
6HCQ|1|A2|A|61
6HCQ|1|A2|G|62
*
6HCQ|1|A2|C|86
6HCQ|1|A2|U|87
6HCQ|1|A2|G|88
6HCQ|1|A2|C|89
6HCQ|1|A2|G|90
6HCQ|1|A2|A|91
6HCQ|1|A2|A|92
6HCQ|1|A2|U|93
6HCQ|1|A2|G|94
6HCQ|1|A2|G|95
6HCQ|1|A2|C|96
6HCQ|1|A2|U|97
6HCQ|1|A2|C|98
6HCQ|1|A2|A|99
6HCQ|1|A2|U|100
6HCQ|1|A2|U|101
6HCQ|1|A2|A|102
6HCQ|1|A2|A|103
6HCQ|1|A2|A|104
6HCQ|1|A2|U|105
6HCQ|1|A2|C|106
*
6HCQ|1|A2|G|355
6HCQ|1|A2|C|356
6HCQ|1|A2|C|357
6HCQ|1|A2|C|358
6HCQ|1|A2|U|359
6HCQ|1|A2|A|360
6HCQ|1|A2|U|361
6HCQ|1|A2|C|362
6HCQ|1|A2|A|363
6HCQ|1|A2|A|364
6HCQ|1|A2|C|365
*
6HCQ|1|A2|G|395
6HCQ|1|A2|U|396
6HCQ|1|A2|G|397
6HCQ|1|A2|A|398
6HCQ|1|A2|C|399
6HCQ|1|A2|C|400
6HCQ|1|A2|A|401
6HCQ|1|A2|C|402
6HCQ|1|A2|G|403
6HCQ|1|A2|G|404
6HCQ|1|A2|G|405
6HCQ|1|A2|U|406
6HCQ|1|A2|G|407
6HCQ|1|A2|A|408
6HCQ|1|A2|C|409
6HCQ|1|A2|G|410
6HCQ|1|A2|G|411
6HCQ|1|A2|G|412
6HCQ|1|A2|G|413
*
6HCQ|1|A2|C|424
6HCQ|1|A2|G|425
6HCQ|1|A2|A|426
6HCQ|1|A2|U|427
6HCQ|1|A2|U|428
6HCQ|1|A2|C|429
6HCQ|1|A2|C|430
6HCQ|1|A2|G|431
6HCQ|1|A2|G|432
6HCQ|1|A2|A|433
6HCQ|1|A2|G|434
6HCQ|1|A2|A|435
6HCQ|1|A2|G|436
*
6HCQ|1|A2|C|457
6HCQ|1|A2|A|458
6HCQ|1|A2|C|459
6HCQ|1|A2|A|460
6HCQ|1|A2|U|461
*
6HCQ|1|A2|A|468
6HCQ|1|A2|A|469
6HCQ|1|A2|G|470
6HCQ|1|A2|G|471
6HCQ|1|A2|C|472
6HCQ|1|A2|A|473
6HCQ|1|A2|G|474
6HCQ|1|A2|C|475
6HCQ|1|A2|A|476
6HCQ|1|A2|G|477
6HCQ|1|A2|G|478
6HCQ|1|A2|C|479
6HCQ|1|A2|G|480
6HCQ|1|A2|C|481
6HCQ|1|A2|G|482
6HCQ|1|A2|C|483
6HCQ|1|A2|A|484
6HCQ|1|A2|A|485
6HCQ|1|A2|A|486
6HCQ|1|A2|U|487
6HCQ|1|A2|U|488
6HCQ|1|A2|A|489
*
6HCQ|1|A2|U|511
6HCQ|1|A2|A|512
6HCQ|1|A2|G|513
6HCQ|1|A2|U|514
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain F2
- eS4
- Chain H2
- 40S ribosomal protein S6
- Chain J2
- eS8
- Chain K2
- Ribosomal protein S9 (Predicted)
- Chain M2
- Ribosomal protein S11
- Chain V3
- Ribosomal protein L23
- Chain Y2
- uS12
- Chain Z2
- eS24
Coloring options: