J8_6N1D_001

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGGUAAGG*UUACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU

Length

51 nucleotides

Bulged bases

6N1D|1|A23S|G|530, 6N1D|1|A23S|C|2021, 6N1D|1|A23S|A|2790, 6N1D|1|A23S|C|2791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|A23S|A|8
6N1D|1|A23S|U|9
6N1D|1|A23S|G|10
6N1D|1|A23S|G|11
6N1D|1|A23S|U|12
6N1D|1|A23S|A|13
6N1D|1|A23S|A|14
6N1D|1|A23S|G|15
6N1D|1|A23S|G|16
*
6N1D|1|A23S|U|524
6N1D|1|A23S|U|525
6N1D|1|A23S|A|526
6N1D|1|A23S|C|527
6N1D|1|A23S|A|528
6N1D|1|A23S|A|529
6N1D|1|A23S|G|530
6N1D|1|A23S|C|531
*
6N1D|1|A23S|G|2018
6N1D|1|A23S|A|2019
6N1D|1|A23S|A|2020
6N1D|1|A23S|C|2021
6N1D|1|A23S|U|2022
6N1D|1|A23S|G|2023
*
6N1D|1|A23S|C|2040
6N1D|1|A23S|U|2041
6N1D|1|A23S|A|2042
6N1D|1|A23S|C|2043
*
6N1D|1|A23S|G|2625
6N1D|1|A23S|C|2626
6N1D|1|A23S|G|2627
6N1D|1|A23S|C|2628
6N1D|1|A23S|A|2629
6N1D|1|A23S|G|2630
*
6N1D|1|A23S|C|2788
6N1D|1|A23S|C|2789
6N1D|1|A23S|A|2790
6N1D|1|A23S|C|2791
6N1D|1|A23S|G|2792
*
6N1D|1|A23S|C|2804
6N1D|1|A23S|G|2805
6N1D|1|A23S|G|2807
6N1D|1|A23S|U|2808
6N1D|1|A23S|A|2809
6N1D|1|A23S|A|2810
6N1D|1|A23S|G|2811
*
6N1D|1|A23S|C|2889
6N1D|1|A23S|G|2890
6N1D|1|A23S|A|2892
6N1D|1|A23S|G|2893
6N1D|1|A23S|G|2894
6N1D|1|A23S|U|2895

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL13

50S ribosomal protein L13

Chain AL20

50S ribosomal protein L20

Chain AL22

50S ribosomal protein L22

Chain AL32

50S ribosomal protein L32