Loop J8_6OGI

3D structure

PDB id: 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CGACUAAG*UACAAGC*GAACUC*GUACC*GGCGCUG*CCUGAC*GUCC*GAGG
Length: 47 nucleotides
Bulged bases: 6OGI|1|1|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OGI|1|1|C|8
6OGI|1|1|G|9
6OGI|1|1|A|10
6OGI|1|1|C|11
6OGI|1|1|U|12
6OGI|1|1|A|13
6OGI|1|1|A|14
6OGI|1|1|G|15
*
6OGI|1|1|U|525
6OGI|1|1|A|526
6OGI|1|1|C|527
6OGI|1|1|A|528
6OGI|1|1|A|529
6OGI|1|1|G|530
6OGI|1|1|C|531
*
6OGI|1|1|G|2018
6OGI|1|1|A|2019
6OGI|1|1|A|2020
6OGI|1|1|C|2021
6OGI|1|1|U|2022
6OGI|1|1|C|2023
*
6OGI|1|1|G|2040
6OGI|1|1|U|2041
6OGI|1|1|A|2042
6OGI|1|1|C|2043
6OGI|1|1|C|2044
*
6OGI|1|1|G|2624
6OGI|1|1|G|2625
6OGI|1|1|C|2626
6OGI|1|1|G|2627
6OGI|1|1|C|2628
6OGI|1|1|U|2629
6OGI|1|1|G|2630
*
6OGI|1|1|C|2788
6OGI|1|1|C|2789
6OGI|1|1|U|2790
6OGI|1|1|G|2791
6OGI|1|1|A|2792
6OGI|1|1|C|2793
*
6OGI|1|1|G|2803
6OGI|1|1|U|2804
6OGI|1|1|C|2805
6OGI|1|1|C|2806
*
6OGI|1|1|G|2892
6OGI|1|1|A|2893
6OGI|1|1|G|2894
6OGI|1|1|G|2895

Current chains

Chain 1: 23S ribosomal RNA

Nearby chains

Chain B: 50S ribosomal protein L32
Chain c: 50S ribosomal protein L3
Chain j: 50S ribosomal protein L13
Chain q: 50S ribosomal protein L20
Chain s: 50S ribosomal protein L22

J8_6OGI_001