3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUACC*GGCGCUG*CCUGAC*GUCC*GAGG
Length
47 nucleotides
Bulged bases
6OGI|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGI|1|1|C|8
6OGI|1|1|G|9
6OGI|1|1|A|10
6OGI|1|1|C|11
6OGI|1|1|U|12
6OGI|1|1|A|13
6OGI|1|1|A|14
6OGI|1|1|G|15
*
6OGI|1|1|U|525
6OGI|1|1|A|526
6OGI|1|1|C|527
6OGI|1|1|A|528
6OGI|1|1|A|529
6OGI|1|1|G|530
6OGI|1|1|C|531
*
6OGI|1|1|G|2018
6OGI|1|1|A|2019
6OGI|1|1|A|2020
6OGI|1|1|C|2021
6OGI|1|1|U|2022
6OGI|1|1|C|2023
*
6OGI|1|1|G|2040
6OGI|1|1|U|2041
6OGI|1|1|A|2042
6OGI|1|1|C|2043
6OGI|1|1|C|2044
*
6OGI|1|1|G|2624
6OGI|1|1|G|2625
6OGI|1|1|C|2626
6OGI|1|1|G|2627
6OGI|1|1|C|2628
6OGI|1|1|U|2629
6OGI|1|1|G|2630
*
6OGI|1|1|C|2788
6OGI|1|1|C|2789
6OGI|1|1|U|2790
6OGI|1|1|G|2791
6OGI|1|1|A|2792
6OGI|1|1|C|2793
*
6OGI|1|1|G|2803
6OGI|1|1|U|2804
6OGI|1|1|C|2805
6OGI|1|1|C|2806
*
6OGI|1|1|G|2892
6OGI|1|1|A|2893
6OGI|1|1|G|2894
6OGI|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:

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