J8_6Q97_001
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGACUAAGCGUA*UACGUACAAGC*GAACUCG*UGUAC*GCGCUGGAGAA*UUCUCCCUG*CCUGAAG*CGUGAGG
- Length
- 69 nucleotides
- Bulged bases
- 6Q97|1|1|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|C|8
6Q97|1|1|G|9
6Q97|1|1|A|10
6Q97|1|1|C|11
6Q97|1|1|U|12
6Q97|1|1|A|13
6Q97|1|1|A|14
6Q97|1|1|G|15
6Q97|1|1|C|16
6Q97|1|1|G|17
6Q97|1|1|U|18
6Q97|1|1|A|19
*
6Q97|1|1|U|521
6Q97|1|1|A|522
6Q97|1|1|C|523
6Q97|1|1|G|524
6Q97|1|1|U|525
6Q97|1|1|A|526
6Q97|1|1|C|527
6Q97|1|1|A|528
6Q97|1|1|A|529
6Q97|1|1|G|530
6Q97|1|1|C|531
*
6Q97|1|1|G|2018
6Q97|1|1|A|2019
6Q97|1|1|A|2020
6Q97|1|1|C|2021
6Q97|1|1|U|2022
6Q97|1|1|C|2023
6Q97|1|1|G|2024
*
6Q97|1|1|U|2039
6Q97|1|1|G|2040
6Q97|1|1|U|2041
6Q97|1|1|A|2042
6Q97|1|1|C|2043
*
6Q97|1|1|G|2625
6Q97|1|1|C|2626
6Q97|1|1|G|2627
6Q97|1|1|C|2628
6Q97|1|1|U|2629
6Q97|1|1|G|2630
6Q97|1|1|G|2631
6Q97|1|1|A|2632
6Q97|1|1|G|2633
6Q97|1|1|A|2634
6Q97|1|1|A|2635
*
6Q97|1|1|U|2783
6Q97|1|1|U|2784
6Q97|1|1|C|2785
6Q97|1|1|U|2786
6Q97|1|1|C|2787
6Q97|1|1|C|2788
6Q97|1|1|C|2789
6Q97|1|1|U|2790
6Q97|1|1|G|2791
*
6Q97|1|1|C|2805
6Q97|1|1|C|2806
6Q97|1|1|U|2807
6Q97|1|1|G|2808
6Q97|1|1|A|2809
6Q97|1|1|A|2810
6Q97|1|1|G|2811
*
6Q97|1|1|C|2889
6Q97|1|1|G|2890
6Q97|1|1|U|2891
6Q97|1|1|G|2892
6Q97|1|1|A|2893
6Q97|1|1|G|2894
6Q97|1|1|G|2895
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: