J8_6Q97_002
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCGAUGAAG*CGAAUG*CAGUG*CACUAU*AGGCGAACCGG*CCGAGGAAAAGAAAUCAACCGAGAUUCC*GGAGCAG*CUAAAUAC
- Length
- 81 nucleotides
- Bulged bases
- 6Q97|1|1|G|48, 6Q97|1|1|U|50, 6Q97|1|1|A|223, 6Q97|1|1|C|236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|G|45
6Q97|1|1|G|46
6Q97|1|1|C|47
6Q97|1|1|G|48
6Q97|1|1|A|49
6Q97|1|1|U|50
6Q97|1|1|G|51
6Q97|1|1|A|52
6Q97|1|1|A|53
6Q97|1|1|G|54
*
6Q97|1|1|C|116
6Q97|1|1|G|117
6Q97|1|1|A|118
6Q97|1|1|A|119
6Q97|1|1|U|120
6Q97|1|1|G|121
*
6Q97|1|1|C|130
6Q97|1|1|A|131
6Q97|1|1|G|132
6Q97|1|1|U|133
6Q97|1|1|G|134
*
6Q97|1|1|C|145
6Q97|1|1|A|146
6Q97|1|1|C|147
6Q97|1|1|U|148
6Q97|1|1|A|149
6Q97|1|1|U|150
*
6Q97|1|1|A|176
6Q97|1|1|G|177
6Q97|1|1|G|178
6Q97|1|1|C|179
6Q97|1|1|G|180
6Q97|1|1|A|181
6Q97|1|1|A|182
6Q97|1|1|C|183
6Q97|1|1|C|184
6Q97|1|1|G|185
6Q97|1|1|G|186
*
6Q97|1|1|C|210
6Q97|1|1|C|211
6Q97|1|1|G|212
6Q97|1|1|A|213
6Q97|1|1|G|214
6Q97|1|1|G|215
6Q97|1|1|A|216
6Q97|1|1|A|217
6Q97|1|1|A|218
6Q97|1|1|A|219
6Q97|1|1|G|220
6Q97|1|1|A|221
6Q97|1|1|A|222
6Q97|1|1|A|223
6Q97|1|1|U|224
6Q97|1|1|C|225
6Q97|1|1|A|226
6Q97|1|1|A|227
6Q97|1|1|C|228
6Q97|1|1|C|229
6Q97|1|1|G|230
6Q97|1|1|A|231
6Q97|1|1|G|232
6Q97|1|1|A|233
6Q97|1|1|U|234
6Q97|1|1|U|235
6Q97|1|1|C|236
6Q97|1|1|C|237
*
6Q97|1|1|G|260
6Q97|1|1|G|261
6Q97|1|1|A|262
6Q97|1|1|G|263
6Q97|1|1|C|264
6Q97|1|1|A|265
6Q97|1|1|G|266
*
6Q97|1|1|C|426
6Q97|1|1|U|427
6Q97|1|1|A|428
6Q97|1|1|A|429
6Q97|1|1|A|430
6Q97|1|1|U|431
6Q97|1|1|A|432
6Q97|1|1|C|433
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: