Loop J8_7D80

3D structure

PDB id: 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: CAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCU*GGUGGGUAGUUUG*CUCCUCCUAAAGAGUAACGGAGGAGCA*UCAUAGUGAUCCG*CGCUCAACGGAUAAAAGGUACUCCGGGGAUAACA*UCGAUGUCG*UGGGUUUAG*CGGUCCCUAUCUG
Length: 154 nucleotides
Bulged bases: 7D80|1|A|C|2055, 7D80|1|A|A|2062, 7D80|1|A|U|2076, 7D80|1|A|A|2267, 7D80|1|A|A|2268, 7D80|1|A|C|2275, 7D80|1|A|G|2428, 7D80|1|A|A|2439, 7D80|1|A|C|2440, 7D80|1|A|A|2448, 7D80|1|A|U|2449, 7D80|1|A|U|2506, 7D80|1|A|C|2507, 7D80|1|A|U|2609, 7D80|1|A|U|2613
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7D80|1|A|C|2050
7D80|1|A|A|2051
7D80|1|A|A|2052
7D80|1|A|G|2053
7D80|1|A|A|2054
7D80|1|A|C|2055
7D80|1|A|G|2056
7D80|1|A|G|2057
7D80|1|A|A|2058
7D80|1|A|A|2059
7D80|1|A|A|2060
7D80|1|A|G|2061
7D80|1|A|A|2062
7D80|1|A|C|2063
7D80|1|A|C|2064
7D80|1|A|C|2065
7D80|1|A|C|2066
7D80|1|A|G|2067
7D80|1|A|U|2068
7D80|1|A|G|2069
7D80|1|A|A|2070
7D80|1|A|A|2071
7D80|1|A|C|2072
7D80|1|A|C|2073
7D80|1|A|U|2074
7D80|1|A|U|2075
7D80|1|A|U|2076
7D80|1|A|A|2077
7D80|1|A|C|2078
7D80|1|A|U|2079
7D80|1|A|A|2080
7D80|1|A|U|2081
7D80|1|A|A|2082
7D80|1|A|G|2083
7D80|1|A|C|2084
7D80|1|A|U|2085
*
7D80|1|A|G|2234
7D80|1|A|G|2235
7D80|1|A|U|2236
7D80|1|A|G|2237
7D80|1|A|G|2238
7D80|1|A|G|2239
7D80|1|A|U|2240
7D80|1|A|A|2241
7D80|1|A|G|2242
7D80|1|A|U|2243
7D80|1|A|U|2244
7D80|1|A|U|2245
7D80|1|A|G|2246
*
7D80|1|A|C|2258
7D80|1|A|U|2259
7D80|1|A|C|2260
7D80|1|A|C|2261
7D80|1|A|U|2262
7D80|1|A|C|2263
7D80|1|A|C|2264
7D80|1|A|U|2265
7D80|1|A|A|2266
7D80|1|A|A|2267
7D80|1|A|A|2268
7D80|1|A|G|2269
7D80|1|A|A|2270
7D80|1|A|G|2271
7D80|1|A|U|2272
7D80|1|A|A|2273
7D80|1|A|A|2274
7D80|1|A|C|2275
7D80|1|A|G|2276
7D80|1|A|G|2277
7D80|1|A|A|2278
7D80|1|A|G|2279
7D80|1|A|G|2280
7D80|1|A|A|2281
7D80|1|A|G|2282
7D80|1|A|C|2283
7D80|1|A|A|2284
*
7D80|1|A|U|2384
7D80|1|A|C|2385
7D80|1|A|A|2386
7D80|1|A|U|2387
7D80|1|A|A|2388
7D80|1|A|G|2389
7D80|1|A|U|2390
7D80|1|A|G|2391
7D80|1|A|A|2392
7D80|1|A|U|2393
7D80|1|A|C|2394
7D80|1|A|C|2395
7D80|1|A|G|2396
*
7D80|1|A|C|2420
7D80|1|A|G|2421
7D80|1|A|C|2422
7D80|1|A|U|2423
7D80|1|A|C|2424
7D80|1|A|A|2425
7D80|1|A|A|2426
7D80|1|A|C|2427
7D80|1|A|G|2428
7D80|1|A|G|2429
7D80|1|A|A|2430
7D80|1|A|U|2431
7D80|1|A|A|2432
7D80|1|A|A|2433
7D80|1|A|A|2434
7D80|1|A|A|2435
7D80|1|A|G|2436
7D80|1|A|G|2437
7D80|1|A|U|2438
7D80|1|A|A|2439
7D80|1|A|C|2440
7D80|1|A|U|2441
7D80|1|A|C|2442
7D80|1|A|C|2443
7D80|1|A|G|2444
7D80|1|A|G|2445
7D80|1|A|G|2446
7D80|1|A|G|2447
7D80|1|A|A|2448
7D80|1|A|U|2449
7D80|1|A|A|2450
7D80|1|A|A|2451
7D80|1|A|C|2452
7D80|1|A|A|2453
*
7D80|1|A|U|2500
7D80|1|A|C|2501
7D80|1|A|G|2502
7D80|1|A|A|2503
7D80|1|A|U|2504
7D80|1|A|G|2505
7D80|1|A|U|2506
7D80|1|A|C|2507
7D80|1|A|G|2508
*
7D80|1|A|U|2580
7D80|1|A|G|2581
7D80|1|A|G|2582
7D80|1|A|G|2583
7D80|1|A|U|2584
7D80|1|A|U|2585
7D80|1|A|U|2586
7D80|1|A|A|2587
7D80|1|A|G|2588
*
7D80|1|A|C|2606
7D80|1|A|G|2607
7D80|1|A|G|2608
7D80|1|A|U|2609
7D80|1|A|C|2610
7D80|1|A|C|2611
7D80|1|A|C|2612
7D80|1|A|U|2613
7D80|1|A|A|2614
7D80|1|A|U|2615
7D80|1|A|C|2616
7D80|1|A|U|2617
7D80|1|A|G|2618

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 1: 50S ribosomal protein L35
Chain 6: 50S ribosomal protein L32
Chain X: Transfer RNA; tRNA
Chain Z: Transfer RNA; tRNA
Chain b: 50S ribosomal protein L2
Chain c: 50S ribosomal protein L3
Chain d: 50S ribosomal protein L4
Chain k: 50S ribosomal protein L15
Chain l: 50S ribosomal protein L16
Chain r: 50S ribosomal protein L22
Chain u: 50S ribosomal protein L27
Chain v: 50S ribosomal protein L28
Chain y: Transfer RNA; tRNA
Chain z: 50S ribosomal protein L33

J8_7D80_002