Loop J8_7F0D

3D structure

PDB id: 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: GUGUCUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAAC
Length: 49 nucleotides
Bulged bases: 7F0D|1|A|U|618, 7F0D|1|A|C|2259, 7F0D|1|A|A|3028
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7F0D|1|A|G|7
7F0D|1|A|U|8
7F0D|1|A|G|9
7F0D|1|A|U|10
7F0D|1|A|C|11
7F0D|1|A|U|12
7F0D|1|A|A|13
7F0D|1|A|A|14
7F0D|1|A|G|15
*
7F0D|1|A|U|613
7F0D|1|A|A|614
7F0D|1|A|C|615
7F0D|1|A|A|616
7F0D|1|A|A|617
7F0D|1|A|U|618
7F0D|1|A|C|619
*
7F0D|1|A|G|2256
7F0D|1|A|C|2257
7F0D|1|A|A|2258
7F0D|1|A|C|2259
7F0D|1|A|U|2260
7F0D|1|A|A|2261
*
7F0D|1|A|U|2278
7F0D|1|A|U|2279
7F0D|1|A|A|2280
7F0D|1|A|C|2281
*
7F0D|1|A|G|2863
7F0D|1|A|C|2864
7F0D|1|A|G|2865
7F0D|1|A|U|2866
7F0D|1|A|C|2867
7F0D|1|A|A|2868
*
7F0D|1|A|U|3026
7F0D|1|A|C|3027
7F0D|1|A|A|3028
7F0D|1|A|C|3029
*
7F0D|1|A|G|3041
7F0D|1|A|A|3042
7F0D|1|A|U|3043
7F0D|1|A|A|3044
7F0D|1|A|A|3045
7F0D|1|A|G|3046
*
7F0D|1|A|C|3124
7F0D|1|A|G|3125
7F0D|1|A|A|3126
7F0D|1|A|A|3127
7F0D|1|A|A|3128
7F0D|1|A|A|3129
7F0D|1|A|C|3130

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain J: 50S ribosomal protein L13
Chain Q: 50S ribosomal protein L20
Chain S: 50S ribosomal protein L22

J8_7F0D_001