Loop J8_8CVM

3D structure

PDB id: 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.66 Å

Loop

Sequence: GUUGUGUAG*UGCAAGC*GCAUUA*UUAC*GCGGAG*CCAC*GGUAAG*CGAGGACU
Length: 50 nucleotides
Bulged bases: 8CVM|1|a|U|12, 8CVM|1|a|A|2972
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CVM|1|a|G|6
8CVM|1|a|U|7
8CVM|1|a|U|8
8CVM|1|a|G|9
8CVM|1|a|U|10
8CVM|1|a|G|11
8CVM|1|a|U|12
8CVM|1|a|A|13
8CVM|1|a|G|14
*
8CVM|1|a|U|613
8CVM|1|a|G|614
8CVM|1|a|C|615
8CVM|1|a|A|616
8CVM|1|a|A|617
8CVM|1|a|G|618
8CVM|1|a|C|619
*
8CVM|1|a|G|2201
8CVM|1|a|C|2202
8CVM|1|a|A|2203
8CVM|1|a|U|2204
8CVM|1|a|U|2205
8CVM|1|a|A|2206
*
8CVM|1|a|U|2223
8CVM|1|a|U|2224
8CVM|1|a|A|2225
8CVM|1|a|C|2226
*
8CVM|1|a|G|2807
8CVM|1|a|C|2808
8CVM|1|a|G|2809
8CVM|1|a|G|2810
8CVM|1|a|A|2811
8CVM|1|a|G|2812
*
8CVM|1|a|C|2970
8CVM|1|a|C|2971
8CVM|1|a|A|2972
8CVM|1|a|C|2973
*
8CVM|1|a|G|2986
8CVM|1|a|G|2987
8CVM|1|a|U|2988
8CVM|1|a|A|2989
8CVM|1|a|A|2990
8CVM|1|a|G|2991
*
8CVM|1|a|C|3069
8CVM|1|a|G|3070
8CVM|1|a|A|3071
8CVM|1|a|G|3072
8CVM|1|a|G|3073
8CVM|1|a|A|3074
8CVM|1|a|C|3075
8CVM|1|a|U|3076

Current chains

Chain a: 23S ribosomal RNA

Nearby chains

Chain d: 50S ribosomal protein L3
Chain i: 50S ribosomal protein L13
Chain p: 50S ribosomal protein L20
Chain r: 50S ribosomal protein L22
Chain z: 50S ribosomal protein L32

J8_8CVM_001